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Plasma protein biomarkers predict the development of persistent autoantibodies and type 1 diabetes 6 months prior to the onset of autoimmunity.
Nakayasu ES, Bramer LM, Ansong C, Schepmoes AA, Fillmore TL, Gritsenko MA, Clauss TR, Gao Y, Piehowski PD, Stanfill BA, Engel DW, Orton DJ, Moore RJ, Qian WJ, Sechi S, Frohnert BI, Toppari J, Ziegler AG, Lernmark Å, Hagopian W, Akolkar B, Smith RD, Rewers MJ, Webb-Robertson BM, Metz TO; TEDDY Study Group. Nakayasu ES, et al. Among authors: stanfill ba. Cell Rep Med. 2023 Jul 18;4(7):101093. doi: 10.1016/j.xcrm.2023.101093. Epub 2023 Jun 29. Cell Rep Med. 2023. PMID: 37390828 Free PMC article.
Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data.
Stanfill BA, Nakayasu ES, Bramer LM, Thompson AM, Ansong CK, Clauss TR, Gritsenko MA, Monroe ME, Moore RJ, Orton DJ, Piehowski PD, Schepmoes AA, Smith RD, Webb-Robertson BM, Metz TO; TEDDY Study Group. Stanfill BA, et al. Mol Cell Proteomics. 2018 Sep;17(9):1824-1836. doi: 10.1074/mcp.RA118.000648. Epub 2018 Apr 17. Mol Cell Proteomics. 2018. PMID: 29666158 Free PMC article.
Extending Classification Algorithms to Case-Control Studies.
Stanfill B, Reehl S, Bramer L, Nakayasu ES, Rich SS, Metz TO, Rewers M, Webb-Robertson BJ; TEDDY Study Group. Stanfill B, et al. Biomed Eng Comput Biol. 2019 Jul 15;10:1179597219858954. doi: 10.1177/1179597219858954. eCollection 2019. Biomed Eng Comput Biol. 2019. PMID: 31320812 Free PMC article.
pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.
Stratton KG, Webb-Robertson BM, McCue LA, Stanfill B, Claborne D, Godinez I, Johansen T, Thompson AM, Burnum-Johnson KE, Waters KM, Bramer LM. Stratton KG, et al. J Proteome Res. 2019 Mar 1;18(3):1418-1425. doi: 10.1021/acs.jproteome.8b00760. Epub 2019 Jan 28. J Proteome Res. 2019. PMID: 30638385 Free PMC article.
Metabotyping as a Stopover in Genome-to-Phenome Mapping.
Handakumbura PP, Stanfill B, Rivas-Ubach A, Fortin D, Vogel JP, Jansson C. Handakumbura PP, et al. Sci Rep. 2019 Feb 12;9(1):1858. doi: 10.1038/s41598-019-38483-0. Sci Rep. 2019. PMID: 30755686 Free PMC article.
Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil.
Peterson MJ, Handakumbura PP, Thompson AM, Russell ZR, Kim YM, Fansler SJ, Smith ML, Toyoda JG, Chu RK, Stanfill BA, Fransen SC, Bailey VL, Jansson C, Hixson KK, Callister SJ. Peterson MJ, et al. Among authors: stanfill ba. PLoS One. 2021 Dec 8;16(12):e0259937. doi: 10.1371/journal.pone.0259937. eCollection 2021. PLoS One. 2021. PMID: 34879068 Free PMC article.