Standley DM - Search Results

1

Expression of the readthrough transcript CiDRE in alveolar macrophages boosts SARS-CoV-2 susceptibility and promotes COVID-19 severity.

Mitsui Y, Suzuki T, Kuniyoshi K, Inamo J, Yamaguchi K, Komuro M, Watanabe J, Edamoto M, Li S, Kouno T, Oba S, Hosoya T, Masuhiro K, Naito Y, Koyama S, Sakaguchi N, Standley DM, Shin JW, Akira S, Yasuda S, Miyazaki Y, Kochi Y, Kumanogoh A, Okamoto T, Satoh T. Mitsui Y, et al. Among authors: standley dm. Immunity. 2023 Aug 8;56(8):1939-1954.e12. doi: 10.1016/j.immuni.2023.06.013. Epub 2023 Jul 12. Immunity. 2023. PMID: 37442134

2

Protein structure prediction using a combination of sequence-based alignment, constrained energy minimization, and structural alignment.

Standley DM, Eyrich VA, An Y, Pincus DL, Gunn JR, Friesner RA. Standley DM, et al. Proteins. 2001;Suppl 5:133-9. doi: 10.1002/prot.10005. Proteins. 2001. PMID: 11835490

3

Outcome of a workshop on archiving structural models of biological macromolecules.

Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B, Saibil H, Schwede T, Standley DM, Westbrook JD. Berman HM, et al. Among authors: standley dm. Structure. 2006 Aug;14(8):1211-7. doi: 10.1016/j.str.2006.06.005. Structure. 2006. PMID: 16955948 Free article. No abstract available.

4

Tertiary structure prediction of mixed alpha/beta proteins via energy minimization.

Standley DM, Gunn JR, Friesner RA, McDermott AE. Standley DM, et al. Proteins. 1998 Nov 1;33(2):240-52. Proteins. 1998. PMID: 9779791

5

[From structures to functions: annotation by structural bioinformatics].

Standley DM, Nakamura H. Standley DM, et al. Tanpakushitsu Kakusan Koso. 2008 Apr;53(5):638-44. Tanpakushitsu Kakusan Koso. 2008. PMID: 18409555 Review. Japanese. No abstract available.

6

A branch and bound algorithm for protein structure refinement from sparse NMR data sets.

Standley DM, Eyrich VA, Felts AK, Friesner RA, McDermott AE. Standley DM, et al. J Mol Biol. 1999 Jan 29;285(4):1691-710. doi: 10.1006/jmbi.1998.2372. J Mol Biol. 1999. PMID: 9917406 Free article.

7

Prediction of protein tertiary structure to low resolution: performance for a large and structurally diverse test set.

Eyrich VA, Standley DM, Friesner RA. Eyrich VA, et al. Among authors: standley dm. J Mol Biol. 1999 May 14;288(4):725-42. doi: 10.1006/jmbi.1999.2702. J Mol Biol. 1999. PMID: 10329175 Free article.

8

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results.

Liang S, Zheng D, Standley DM, Yao B, Zacharias M, Zhang C. Liang S, et al. Among authors: standley dm. BMC Bioinformatics. 2010 Jul 16;11:381. doi: 10.1186/1471-2105-11-381. BMC Bioinformatics. 2010. PMID: 20637083 Free PMC article.

9

Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay.

Matsushita K, Takeuchi O, Standley DM, Kumagai Y, Kawagoe T, Miyake T, Satoh T, Kato H, Tsujimura T, Nakamura H, Akira S. Matsushita K, et al. Among authors: standley dm. Nature. 2009 Apr 30;458(7242):1185-90. doi: 10.1038/nature07924. Epub 2009 Mar 25. Nature. 2009. PMID: 19322177

10

The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection.

Satoh T, Takeuchi O, Vandenbon A, Yasuda K, Tanaka Y, Kumagai Y, Miyake T, Matsushita K, Okazaki T, Saitoh T, Honma K, Matsuyama T, Yui K, Tsujimura T, Standley DM, Nakanishi K, Nakai K, Akira S. Satoh T, et al. Among authors: standley dm. Nat Immunol. 2010 Oct;11(10):936-44. doi: 10.1038/ni.1920. Epub 2010 Aug 22. Nat Immunol. 2010. PMID: 20729857

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