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Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.
Narunsky-Haziza L, Sepich-Poore GD, Livyatan I, Asraf O, Martino C, Nejman D, Gavert N, Stajich JE, Amit G, González A, Wandro S, Perry G, Ariel R, Meltser A, Shaffer JP, Zhu Q, Balint-Lahat N, Barshack I, Dadiani M, Gal-Yam EN, Patel SP, Bashan A, Swafford AD, Pilpel Y, Knight R, Straussman R. Narunsky-Haziza L, et al. Among authors: stajich je. Cell. 2022 Sep 29;185(20):3789-3806.e17. doi: 10.1016/j.cell.2022.09.005. Cell. 2022. PMID: 36179670 Free PMC article.
Diversity of cytosine methylation across the fungal tree of life.
Bewick AJ, Hofmeister BT, Powers RA, Mondo SJ, Grigoriev IV, James TY, Stajich JE, Schmitz RJ. Bewick AJ, et al. Among authors: stajich je. Nat Ecol Evol. 2019 Mar;3(3):479-490. doi: 10.1038/s41559-019-0810-9. Epub 2019 Feb 18. Nat Ecol Evol. 2019. PMID: 30778188 Free PMC article.
FGMP: assessing fungal genome completeness.
Cissé OH, Stajich JE. Cissé OH, et al. Among authors: stajich je. BMC Bioinformatics. 2019 Apr 15;20(1):184. doi: 10.1186/s12859-019-2782-9. BMC Bioinformatics. 2019. PMID: 30987585 Free PMC article.
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives.
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, Hung CY, McMahan C, Muszewska A, Grynberg M, Mandel MA, Kellner EM, Barker BM, Galgiani JN, Orbach MJ, Kirkland TN, Cole GT, Henn MR, Birren BW, Taylor JW. Sharpton TJ, et al. Among authors: stajich je. Genome Res. 2009 Oct;19(10):1722-31. doi: 10.1101/gr.087551.108. Epub 2009 Aug 28. Genome Res. 2009. PMID: 19717792 Free PMC article.
Cellular Subcompartments through Cytoplasmic Streaming.
Pieuchot L, Lai J, Loh RA, Leong FY, Chiam KH, Stajich J, Jedd G. Pieuchot L, et al. Dev Cell. 2015 Aug 24;34(4):410-20. doi: 10.1016/j.devcel.2015.07.017. Dev Cell. 2015. PMID: 26305593 Free article.
Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles.
Castanera R, López-Varas L, Borgognone A, LaButti K, Lapidus A, Schmutz J, Grimwood J, Pérez G, Pisabarro AG, Grigoriev IV, Stajich JE, Ramírez L. Castanera R, et al. Among authors: stajich je. PLoS Genet. 2016 Jun 13;12(6):e1006108. doi: 10.1371/journal.pgen.1006108. eCollection 2016 Jun. PLoS Genet. 2016. PMID: 27294409 Free PMC article.
244 results