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Synchronous RNA conformational changes trigger ordered phase transitions in crystals.
Ramakrishnan S, Stagno JR, Conrad CE, Ding J, Yu P, Bhandari YR, Lee YT, Pauly G, Yefanov O, Wiedorn MO, Knoska J, Oberthür D, White TA, Barty A, Mariani V, Li C, Brehm W, Heinz WF, Magidson V, Lockett S, Hunter MS, Boutet S, Zatsepin NA, Zuo X, Grant TD, Pandey S, Schmidt M, Spence JCH, Chapman HN, Wang YX. Ramakrishnan S, et al. Among authors: stagno jr. Nat Commun. 2021 Mar 19;12(1):1762. doi: 10.1038/s41467-021-21838-5. Nat Commun. 2021. PMID: 33741910 Free PMC article.
Crystal structure of a plectonemic RNA supercoil.
Stagno JR, Ma B, Li J, Altieri AS, Byrd RA, Ji X. Stagno JR, et al. Nat Commun. 2012 Jun 12;3:901. doi: 10.1038/ncomms1903. Nat Commun. 2012. PMID: 22692544 Free PMC article.
Applications of PLOR in labeling large RNAs at specific sites.
Liu Y, Yu P, Dyba M, Sousa R, Stagno JR, Wang YX. Liu Y, et al. Among authors: stagno jr. Methods. 2016 Jul 1;103:4-10. doi: 10.1016/j.ymeth.2016.03.014. Epub 2016 Mar 23. Methods. 2016. PMID: 27033177 Free PMC article.
Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.
Stagno JR, Liu Y, Bhandari YR, Conrad CE, Panja S, Swain M, Fan L, Nelson G, Li C, Wendel DR, White TA, Coe JD, Wiedorn MO, Knoska J, Oberthuer D, Tuckey RA, Yu P, Dyba M, Tarasov SG, Weierstall U, Grant TD, Schwieters CD, Zhang J, Ferré-D'Amaré AR, Fromme P, Draper DE, Liang M, Hunter MS, Boutet S, Tan K, Zuo X, Ji X, Barty A, Zatsepin NA, Chapman HN, Spence JC, Woodson SA, Wang YX. Stagno JR, et al. Nature. 2017 Jan 12;541(7636):242-246. doi: 10.1038/nature20599. Epub 2016 Nov 14. Nature. 2017. PMID: 27841871 Free PMC article.
Topological Structure Determination of RNA Using Small-Angle X-Ray Scattering.
Bhandari YR, Fan L, Fang X, Zaki GF, Stahlberg EA, Jiang W, Schwieters CD, Stagno JR, Wang YX. Bhandari YR, et al. Among authors: stagno jr. J Mol Biol. 2017 Nov 24;429(23):3635-3649. doi: 10.1016/j.jmb.2017.09.006. Epub 2017 Sep 14. J Mol Biol. 2017. PMID: 28918093 Free PMC article.
36 results