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Orthologs, turn-over, and remolding of tRNAs in primates and fruit flies.
Velandia-Huerto CA, Berkemer SJ, Hoffmann A, Retzlaff N, Romero Marroquín LC, Hernández-Rosales M, Stadler PF, Bermúdez-Santana CI. Velandia-Huerto CA, et al. Among authors: stadler pf. BMC Genomics. 2016 Aug 11;17(1):617. doi: 10.1186/s12864-016-2927-4. BMC Genomics. 2016. PMID: 27515907 Free PMC article.
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: stadler pf. Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Sci Rep. 2016. PMID: 27713552 Free PMC article.
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Grüning BA, Fallmann J, Yusuf D, Will S, Erxleben A, Eggenhofer F, Houwaart T, Batut B, Videm P, Bagnacani A, Wolfien M, Lott SC, Hoogstrate Y, Hess WR, Wolkenhauer O, Hoffmann S, Akalin A, Ohler U, Stadler PF, Backofen R. Grüning BA, et al. Among authors: stadler pf. Nucleic Acids Res. 2017 Jul 3;45(W1):W560-W566. doi: 10.1093/nar/gkx409. Nucleic Acids Res. 2017. PMID: 28582575 Free PMC article.
Recent advances in RNA folding.
Fallmann J, Will S, Engelhardt J, Grüning B, Backofen R, Stadler PF. Fallmann J, et al. Among authors: stadler pf. J Biotechnol. 2017 Nov 10;261:97-104. doi: 10.1016/j.jbiotec.2017.07.007. Epub 2017 Jul 8. J Biotechnol. 2017. PMID: 28690134 Free article. Review.
SMORE: Synteny Modulator of Repetitive Elements.
Berkemer SJ, Hoffmann A, Murray CRA, Stadler PF. Berkemer SJ, et al. Among authors: stadler pf. Life (Basel). 2017 Oct 31;7(4):42. doi: 10.3390/life7040042. Life (Basel). 2017. PMID: 29088079 Free PMC article.
Accurate mapping of tRNA reads.
Hoffmann A, Fallmann J, Vilardo E, Mörl M, Stadler PF, Amman F. Hoffmann A, et al. Among authors: stadler pf. Bioinformatics. 2018 Apr 1;34(7):1116-1124. doi: 10.1093/bioinformatics/btx756. Bioinformatics. 2018. PMID: 29228294
Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem.
Prohaska SJ, Berkemer SJ, Gärtner F, Gatter T, Retzlaff N; Students of the Graphs and Biological Networks Lab 2017; Höner Zu Siederdissen C, Stadler PF. Prohaska SJ, et al. Among authors: stadler pf. J Math Biol. 2018 Aug;77(2):313-341. doi: 10.1007/s00285-017-1197-3. Epub 2017 Dec 19. J Math Biol. 2018. PMID: 29260295 Free PMC article.
549 results