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Are spliced ncRNA host genes distinct classes of lncRNAs?
Sen R, Fallmann J, Walter MEMT, Stadler PF. Sen R, et al. Among authors: stadler pf. Theory Biosci. 2020 Dec;139(4):349-359. doi: 10.1007/s12064-020-00330-6. Epub 2020 Nov 21. Theory Biosci. 2020. PMID: 33219910 Free PMC article.
Evolutionary patterns of non-coding RNAs.
Bompfünewerer AF, Flamm C, Fried C, Fritzsch G, Hofacker IL, Lehmann J, Missal K, Mosig A, Müller B, Prohaska SJ, Stadler BM, Stadler PF, Tanzer A, Washietl S, Witwer C. Bompfünewerer AF, et al. Among authors: stadler pf, stadler bm. Theory Biosci. 2005 Apr;123(4):301-69. doi: 10.1016/j.thbio.2005.01.002. Theory Biosci. 2005. PMID: 18202870
"Genes".
Prohaska SJ, Stadler PF. Prohaska SJ, et al. Among authors: stadler pf. Theory Biosci. 2008 Aug;127(3):215-21. doi: 10.1007/s12064-008-0025-0. Epub 2008 Mar 5. Theory Biosci. 2008. PMID: 18320253 Free PMC article.
Defining genes: a computational framework.
Stadler PF, Prohaska SJ, Forst CV, Krakauer DC. Stadler PF, et al. Theory Biosci. 2009 Aug;128(3):165-70. doi: 10.1007/s12064-009-0067-y. Epub 2009 Jun 26. Theory Biosci. 2009. PMID: 19557452 Free PMC article.
Hidden treasures in unspliced EST data.
Engelhardt J, Stadler PF. Engelhardt J, et al. Among authors: stadler pf. Theory Biosci. 2012 May;131(1):49-57. doi: 10.1007/s12064-012-0151-6. Epub 2012 Apr 8. Theory Biosci. 2012. PMID: 22485013
snoStrip: a snoRNA annotation pipeline.
Bartschat S, Kehr S, Tafer H, Stadler PF, Hertel J. Bartschat S, et al. Among authors: stadler pf. Bioinformatics. 2014 Jan 1;30(1):115-6. doi: 10.1093/bioinformatics/btt604. Epub 2013 Oct 29. Bioinformatics. 2014. PMID: 24174566
Clustering rfam 10.1: clans, families, and classes.
Lessa FA, Raiol T, Brigido MM, Martins Neto DS, Walter ME, Stadler PF. Lessa FA, et al. Among authors: stadler pf. Genes (Basel). 2012 Jul 5;3(3):378-90. doi: 10.3390/genes3030378. Genes (Basel). 2012. PMID: 24704975 Free PMC article.
Conservation and losses of non-coding RNAs in avian genomes.
Gardner PP, Fasold M, Burge SW, Ninova M, Hertel J, Kehr S, Steeves TE, Griffiths-Jones S, Stadler PF. Gardner PP, et al. Among authors: stadler pf. PLoS One. 2015 Mar 30;10(3):e0121797. doi: 10.1371/journal.pone.0121797. eCollection 2015. PLoS One. 2015. PMID: 25822729 Free PMC article.
594 results