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TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes.
Waldl M, Thiel BC, Ochsenreiter R, Holzenleiter A, de Araujo Oliveira JV, Walter MEMT, Wolfinger MT, Stadler PF. Waldl M, et al. Among authors: stadler pf. Genes (Basel). 2018 Jul 26;9(8):372. doi: 10.3390/genes9080372. Genes (Basel). 2018. PMID: 30049970 Free PMC article.
Folding kinetics of large RNAs.
Geis M, Flamm C, Wolfinger MT, Tanzer A, Hofacker IL, Middendorf M, Mandl C, Stadler PF, Thurner C. Geis M, et al. Among authors: stadler pf. J Mol Biol. 2008 May 23;379(1):160-73. doi: 10.1016/j.jmb.2008.02.064. Epub 2008 Mar 6. J Mol Biol. 2008. PMID: 18440024
BarMap: RNA folding on dynamic energy landscapes.
Hofacker IL, Flamm C, Heine C, Wolfinger MT, Scheuermann G, Stadler PF. Hofacker IL, et al. Among authors: stadler pf. RNA. 2010 Jul;16(7):1308-16. doi: 10.1261/rna.2093310. Epub 2010 May 26. RNA. 2010. PMID: 20504954 Free PMC article.
TSSAR: TSS annotation regime for dRNA-seq data.
Amman F, Wolfinger MT, Lorenz R, Hofacker IL, Stadler PF, Findeiß S. Amman F, et al. Among authors: stadler pf. BMC Bioinformatics. 2014 Mar 27;15:89. doi: 10.1186/1471-2105-15-89. BMC Bioinformatics. 2014. PMID: 24674136 Free PMC article.
Clustering rfam 10.1: clans, families, and classes.
Lessa FA, Raiol T, Brigido MM, Martins Neto DS, Walter ME, Stadler PF. Lessa FA, et al. Among authors: stadler pf. Genes (Basel). 2012 Jul 5;3(3):378-90. doi: 10.3390/genes3030378. Genes (Basel). 2012. PMID: 24704975 Free PMC article.
SHAPE directed RNA folding.
Lorenz R, Luntzer D, Hofacker IL, Stadler PF, Wolfinger MT. Lorenz R, et al. Among authors: stadler pf. Bioinformatics. 2016 Jan 1;32(1):145-7. doi: 10.1093/bioinformatics/btv523. Epub 2015 Sep 9. Bioinformatics. 2016. PMID: 26353838 Free PMC article.
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: stadler pf. Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Sci Rep. 2016. PMID: 27713552 Free PMC article.
593 results