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Unusual Novel SnoRNA-Like RNAs in Drosophila melanogaster.
Agrisani A, Tafer H, Stadler PF, Furia M. Agrisani A, et al. Among authors: stadler pf. Noncoding RNA. 2015 Jul 13;1(2):139-150. doi: 10.3390/ncrna1020139. Noncoding RNA. 2015. PMID: 29861420 Free PMC article.
Thermodynamics of RNA-RNA binding.
Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL. Mückstein U, et al. Among authors: stadler pf. Bioinformatics. 2006 May 15;22(10):1177-82. doi: 10.1093/bioinformatics/btl024. Epub 2006 Jan 29. Bioinformatics. 2006. PMID: 16446276
Partition function and base pairing probabilities of RNA heterodimers.
Bernhart SH, Tafer H, Mückstein U, Flamm C, Stadler PF, Hofacker IL. Bernhart SH, et al. Among authors: stadler pf. Algorithms Mol Biol. 2006 Mar 16;1(1):3. doi: 10.1186/1748-7188-1-3. Algorithms Mol Biol. 2006. PMID: 16722605 Free PMC article.
Invertebrate 7SK snRNAs.
Gruber AR, Koper-Emde D, Marz M, Tafer H, Bernhart S, Obernosterer G, Mosig A, Hofacker IL, Stadler PF, Benecke BJ. Gruber AR, et al. Among authors: stadler pf. J Mol Evol. 2008 Feb;66(2):107-15. doi: 10.1007/s00239-007-9052-6. Epub 2008 Jan 12. J Mol Evol. 2008. PMID: 18193315 Free PMC article.
Non-coding RNA annotation of the genome of Trichoplax adhaerens.
Hertel J, de Jong D, Marz M, Rose D, Tafer H, Tanzer A, Schierwater B, Stadler PF. Hertel J, et al. Among authors: stadler pf. Nucleic Acids Res. 2009 Apr;37(5):1602-15. doi: 10.1093/nar/gkn1084. Epub 2009 Jan 16. Nucleic Acids Res. 2009. PMID: 19151082 Free PMC article.
Comparative analysis of eukaryotic U3 snoRNA.
Marz M, Stadler PF. Marz M, et al. Among authors: stadler pf. RNA Biol. 2009 Nov-Dec;6(5):503-7. doi: 10.4161/rna.6.5.9607. RNA Biol. 2009. PMID: 19875933 Review.
RNAsnoop: efficient target prediction for H/ACA snoRNAs.
Tafer H, Kehr S, Hertel J, Hofacker IL, Stadler PF. Tafer H, et al. Among authors: stadler pf. Bioinformatics. 2010 Mar 1;26(5):610-6. doi: 10.1093/bioinformatics/btp680. Epub 2009 Dec 16. Bioinformatics. 2010. PMID: 20015949
PLEXY: efficient target prediction for box C/D snoRNAs.
Kehr S, Bartschat S, Stadler PF, Tafer H. Kehr S, et al. Among authors: stadler pf. Bioinformatics. 2011 Jan 15;27(2):279-80. doi: 10.1093/bioinformatics/btq642. Epub 2010 Nov 13. Bioinformatics. 2011. PMID: 21076148
Fast accessibility-based prediction of RNA-RNA interactions.
Tafer H, Amman F, Eggenhofer F, Stadler PF, Hofacker IL. Tafer H, et al. Among authors: stadler pf. Bioinformatics. 2011 Jul 15;27(14):1934-40. doi: 10.1093/bioinformatics/btr281. Epub 2011 May 18. Bioinformatics. 2011. PMID: 21593134
RNApredator: fast accessibility-based prediction of sRNA targets.
Eggenhofer F, Tafer H, Stadler PF, Hofacker IL. Eggenhofer F, et al. Among authors: stadler pf. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W149-54. doi: 10.1093/nar/gkr467. Epub 2011 Jun 14. Nucleic Acids Res. 2011. PMID: 21672960 Free PMC article.
593 results