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Accurate mapping of tRNA reads.
Hoffmann A, Fallmann J, Vilardo E, Mörl M, Stadler PF, Amman F. Hoffmann A, et al. Among authors: stadler pf. Bioinformatics. 2018 Jul 1;34(13):2339. doi: 10.1093/bioinformatics/bty118. Bioinformatics. 2018. PMID: 29547898 No abstract available.
tRNAdb 2009: compilation of tRNA sequences and tRNA genes.
Jühling F, Mörl M, Hartmann RK, Sprinzl M, Stadler PF, Pütz J. Jühling F, et al. Among authors: stadler pf. Nucleic Acids Res. 2009 Jan;37(Database issue):D159-62. doi: 10.1093/nar/gkn772. Epub 2008 Oct 28. Nucleic Acids Res. 2009. PMID: 18957446 Free PMC article.
Fast accessibility-based prediction of RNA-RNA interactions.
Tafer H, Amman F, Eggenhofer F, Stadler PF, Hofacker IL. Tafer H, et al. Among authors: stadler pf. Bioinformatics. 2011 Jul 15;27(14):1934-40. doi: 10.1093/bioinformatics/btr281. Epub 2011 May 18. Bioinformatics. 2011. PMID: 21593134
2D meets 4G: G-quadruplexes in RNA secondary structure prediction.
Lorenz R, Bernhart SH, Qin J, Höner zu Siederdissen C, Tanzer A, Amman F, Hofacker IL, Stadler PF. Lorenz R, et al. Among authors: stadler pf. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):832-44. doi: 10.1109/TCBB.2013.7. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24334379
TSSAR: TSS annotation regime for dRNA-seq data.
Amman F, Wolfinger MT, Lorenz R, Hofacker IL, Stadler PF, Findeiß S. Amman F, et al. Among authors: stadler pf. BMC Bioinformatics. 2014 Mar 27;15:89. doi: 10.1186/1471-2105-15-89. BMC Bioinformatics. 2014. PMID: 24674136 Free PMC article.
Design of transcription regulating riboswitches.
Findeiß S, Wachsmuth M, Mörl M, Stadler PF. Findeiß S, et al. Among authors: stadler pf. Methods Enzymol. 2015;550:1-22. doi: 10.1016/bs.mie.2014.10.029. Epub 2014 Dec 26. Methods Enzymol. 2015. PMID: 25605378
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: stadler pf. Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Sci Rep. 2016. PMID: 27713552 Free PMC article.
Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: stadler pf. Sci Rep. 2017 Jan 11;7:39421. doi: 10.1038/srep39421. Sci Rep. 2017. PMID: 28074834 Free PMC article. No abstract available.
Recent advances in RNA folding.
Fallmann J, Will S, Engelhardt J, Grüning B, Backofen R, Stadler PF. Fallmann J, et al. Among authors: stadler pf. J Biotechnol. 2017 Nov 10;261:97-104. doi: 10.1016/j.jbiotec.2017.07.007. Epub 2017 Jul 8. J Biotechnol. 2017. PMID: 28690134 Free article. Review.
Design of Artificial Riboswitches as Biosensors.
Findeiß S, Etzel M, Will S, Mörl M, Stadler PF. Findeiß S, et al. Among authors: stadler pf. Sensors (Basel). 2017 Aug 30;17(9):1990. doi: 10.3390/s17091990. Sensors (Basel). 2017. PMID: 28867802 Free PMC article. Review.
593 results