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Maximum Covering Subtrees for Phylogenetic Networks.
Davidov N, Hernandez A, Jian J, McKenna P, Medlin KA, Mojumder R, Owen M, Quijano A, Rodriguez A, St John K, Thai K, Uraga M. Davidov N, et al. Among authors: st john k. IEEE/ACM Trans Comput Biol Bioinform. 2021 Nov-Dec;18(6):2823-2827. doi: 10.1109/TCBB.2020.3040910. Epub 2021 Dec 8. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 33242309
Hamiltonian walks of phylogenetic treespaces.
Gordon K, Ford E, St John K. Gordon K, et al. Among authors: st john k. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):1076-9. doi: 10.1109/TCBB.2013.105. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24334399
On Determining if Tree-based Networks Contain Fixed Trees.
Anaya M, Anipchenko-Ulaj O, Ashfaq A, Chiu J, Kaiser M, Ohsawa MS, Owen M, Pavlechko E, St John K, Suleria S, Thompson K, Yap C. Anaya M, et al. Among authors: st john k. Bull Math Biol. 2016 May;78(5):961-9. doi: 10.1007/s11538-016-0169-x. Epub 2016 Apr 28. Bull Math Biol. 2016. PMID: 27125655
Walks on SPR neighborhoods.
Caceres AJ, Castillo J, Lee J, St John K. Caceres AJ, et al. Among authors: st john k. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jan-Feb;10(1):236-9. doi: 10.1109/TCBB.2012.136. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 23702562
Untangling tanglegrams: comparing trees by their drawings.
Venkatachalam B, Apple J, St John K, Gusfield D. Venkatachalam B, et al. Among authors: st john k. IEEE/ACM Trans Comput Biol Bioinform. 2010 Oct-Dec;7(4):588-97. doi: 10.1109/TCBB.2010.57. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20530818
On the complexity of uSPR distance.
Bonet ML, St John K. Bonet ML, et al. Among authors: st john k. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):572-6. doi: 10.1109/TCBB.2008.132. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20671326
Approximating subtree distances between phylogenies.
Bonet ML, St John K, Mahindru R, Amenta N. Bonet ML, et al. Among authors: st john k. J Comput Biol. 2006 Oct;13(8):1419-34. doi: 10.1089/cmb.2006.13.1419. J Comput Biol. 2006. PMID: 17061919
83 results