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The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D. Mallick S, et al. Among authors: spence jp. Nature. 2016 Oct 13;538(7624):201-206. doi: 10.1038/nature18964. Epub 2016 Sep 21. Nature. 2016. PMID: 27654912 Free PMC article.
The Site Frequency Spectrum for General Coalescents.
Spence JP, Kamm JA, Song YS. Spence JP, et al. Genetics. 2016 Apr;202(4):1549-61. doi: 10.1534/genetics.115.184101. Epub 2016 Feb 16. Genetics. 2016. PMID: 26883445 Free PMC article.
Predicting the effect of CRISPR-Cas9-based epigenome editing.
Batra SS, Cabrera A, Spence JP, Hilton IB, Song YS. Batra SS, et al. Among authors: spence jp. bioRxiv [Preprint]. 2023 Oct 3:2023.10.03.560674. doi: 10.1101/2023.10.03.560674. bioRxiv. 2023. PMID: 37873127 Free PMC article. Preprint.
Early human dispersals within the Americas.
Moreno-Mayar JV, Vinner L, de Barros Damgaard P, de la Fuente C, Chan J, Spence JP, Allentoft ME, Vimala T, Racimo F, Pinotti T, Rasmussen S, Margaryan A, Iraeta Orbegozo M, Mylopotamitaki D, Wooller M, Bataille C, Becerra-Valdivia L, Chivall D, Comeskey D, Devièse T, Grayson DK, George L, Harry H, Alexandersen V, Primeau C, Erlandson J, Rodrigues-Carvalho C, Reis S, Bastos MQR, Cybulski J, Vullo C, Morello F, Vilar M, Wells S, Gregersen K, Hansen KL, Lynnerup N, Mirazón Lahr M, Kjær K, Strauss A, Alfonso-Durruty M, Salas A, Schroeder H, Higham T, Malhi RS, Rasic JT, Souza L, Santos FR, Malaspinas AS, Sikora M, Nielsen R, Song YS, Meltzer DJ, Willerslev E. Moreno-Mayar JV, et al. Among authors: spence jp. Science. 2018 Dec 7;362(6419):eaav2621. doi: 10.1126/science.aav2621. Epub 2018 Nov 8. Science. 2018. PMID: 30409807
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