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Ancient DNA Studies in Pre-Columbian Mesoamerica.
Roca-Rada X, Souilmi Y, Teixeira JC, Llamas B. Roca-Rada X, et al. Among authors: souilmi y. Genes (Basel). 2020 Nov 13;11(11):1346. doi: 10.3390/genes11111346. Genes (Basel). 2020. PMID: 33202852 Free PMC article. Review.
genozip: a fast and efficient compression tool for VCF files.
Lan D, Tobler R, Souilmi Y, Llamas B. Lan D, et al. Among authors: souilmi y. Bioinformatics. 2020 Jul 1;36(13):4091-4092. doi: 10.1093/bioinformatics/btaa290. Bioinformatics. 2020. PMID: 32407471 Free PMC article.
Equitable Expanded Carrier Screening Needs Indigenous Clinical and Population Genomic Data.
Easteal S, Arkell RM, Balboa RF, Bellingham SA, Brown AD, Calma T, Cook MC, Davis M, Dawkins HJS, Dinger ME, Dobbie MS, Farlow A, Gwynne KG, Hermes A, Hoy WE, Jenkins MR, Jiang SH, Kaplan W, Leslie S, Llamas B, Mann GJ, McMorran BJ, McWhirter RE, Meldrum CJ, Nagaraj SH, Newman SJ, Nunn JS, Ormond-Parker L, Orr NJ, Paliwal D, Patel HR, Pearson G, Pratt GR, Rambaldini B, Russell LW, Savarirayan R, Silcocks M, Skinner JC, Souilmi Y, Vinuesa CG; National Centre for Indigenous Genomics; Baynam G. Easteal S, et al. Among authors: souilmi y. Am J Hum Genet. 2020 Aug 6;107(2):175-182. doi: 10.1016/j.ajhg.2020.06.005. Am J Hum Genet. 2020. PMID: 32763188 Free PMC article.
Genozip: a universal extensible genomic data compressor.
Lan D, Tobler R, Souilmi Y, Llamas B. Lan D, et al. Among authors: souilmi y. Bioinformatics. 2021 Aug 25;37(16):2225-2230. doi: 10.1093/bioinformatics/btab102. Bioinformatics. 2021. PMID: 33585897 Free PMC article.
Systematic benchmark of ancient DNA read mapping.
Oliva A, Tobler R, Cooper A, Llamas B, Souilmi Y. Oliva A, et al. Among authors: souilmi y. Brief Bioinform. 2021 Sep 2;22(5):bbab076. doi: 10.1093/bib/bbab076. Brief Bioinform. 2021. PMID: 33834210
Ancient mitochondrial genomes from the Argentinian Pampas inform the early peopling of the Southern Cone of South America.
Roca-Rada X, Politis G, Messineo PG, Scheifler N, Scabuzzo C, González M, Harkins KM, Reich D, Souilmi Y, Teixeira JC, Llamas B, Fehren-Schmitz L. Roca-Rada X, et al. Among authors: souilmi y. iScience. 2021 May 19;24(6):102553. doi: 10.1016/j.isci.2021.102553. eCollection 2021 Jun 25. iScience. 2021. PMID: 34142055 Free PMC article.
A strategy for building and using a human reference pangenome.
Llamas B, Narzisi G, Schneider V, Audano PA, Biederstedt E, Blauvelt L, Bradbury P, Chang X, Chin CS, Fungtammasan A, Clarke WE, Cleary A, Ebler J, Eizenga J, Sibbesen JA, Markello CJ, Garrison E, Garg S, Hickey G, Lazo GR, Lin MF, Mahmoud M, Marschall T, Minkin I, Monlong J, Musunuri RL, Sagayaradj S, Novak AM, Rautiainen M, Regier A, Sedlazeck FJ, Siren J, Souilmi Y, Wagner J, Wrightsman T, Yokoyama TT, Zeng Q, Zook JM, Paten B, Busby B. Llamas B, et al. Among authors: souilmi y. F1000Res. 2019 Oct 14;8:1751. doi: 10.12688/f1000research.19630.2. eCollection 2019. F1000Res. 2019. PMID: 34386196 Free PMC article.
Admixture has obscured signals of historical hard sweeps in humans.
Souilmi Y, Tobler R, Johar A, Williams M, Grey ST, Schmidt J, Teixeira JC, Rohrlach A, Tuke J, Johnson O, Gower G, Turney C, Cox M, Cooper A, Huber CD. Souilmi Y, et al. Nat Ecol Evol. 2022 Dec;6(12):2003-2015. doi: 10.1038/s41559-022-01914-9. Epub 2022 Oct 31. Nat Ecol Evol. 2022. PMID: 36316412 Free PMC article.
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