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Next-generation sequencing: A new avenue to understand viral RNA-protein interactions.
J Biol Chem. 2022 May;298(5):101924. doi: 10.1016/j.jbc.2022.101924. Epub 2022 Apr 9.
J Biol Chem. 2022.
PMID: 35413291
Free PMC article.
Review.
Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa.
Wang S, Sotcheff SL, Gallardo CM, Jaworski E, Torbett BE, Routh AL.
Wang S, et al. Among authors: sotcheff sl.
Nucleic Acids Res. 2022 Apr 22;50(7):e41. doi: 10.1093/nar/gkab1259.
Nucleic Acids Res. 2022.
PMID: 35018461
Free PMC article.
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Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.
Jaworski E, Langsjoen RM, Mitchell B, Judy B, Newman P, Plante JA, Plante KS, Miller AL, Zhou Y, Swetnam D, Sotcheff S, Morris V, Saada N, Machado RR, McConnell A, Widen SG, Thompson J, Dong J, Ren P, Pyles RB, Ksiazek TG, Menachery VD, Weaver SC, Routh AL.
Jaworski E, et al.
Elife. 2021 Sep 28;10:e68479. doi: 10.7554/eLife.68479.
Elife. 2021.
PMID: 34581669
Free PMC article.
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Zika Virus Infection Alters Gene Expression and Poly-Adenylation Patterns in Placental Cells.
Sotcheff SL, Chen JY, Elrod N, Cao J, Jaworski E, Kuyumcu-Martinez MN, Shi PY, Routh AL.
Sotcheff SL, et al.
Pathogens. 2022 Aug 18;11(8):936. doi: 10.3390/pathogens11080936.
Pathogens. 2022.
PMID: 36015056
Free PMC article.
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Understanding Flavivirus Capsid Protein Functions: The Tip of the Iceberg.
Sotcheff S, Routh A.
Sotcheff S, et al.
Pathogens. 2020 Jan 5;9(1):42. doi: 10.3390/pathogens9010042.
Pathogens. 2020.
PMID: 31948047
Free PMC article.
Review.
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QTQTN motif upstream of the furin-cleavage site plays a key role in SARS-CoV-2 infection and pathogenesis.
Vu MN, Lokugamage KG, Plante JA, Scharton D, Bailey AO, Sotcheff S, Swetnam DM, Johnson BA, Schindewolf C, Alvarado RE, Crocquet-Valdes PA, Debbink K, Weaver SC, Walker DH, Russell WK, Routh AL, Plante KS, Menachery VD.
Vu MN, et al.
Proc Natl Acad Sci U S A. 2022 Aug 9;119(32):e2205690119. doi: 10.1073/pnas.2205690119. Epub 2022 Jul 26.
Proc Natl Acad Sci U S A. 2022.
PMID: 35881779
Free PMC article.
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