Sorger PK - Search Results

1

Development and validation of time-to-event models to predict metastatic recurrence of localized cutaneous melanoma.

Wan G, Leung BW, DeSimone MS, Nguyen N, Rajeh A, Collier MR, Rashdan H, Roster K, Zhou X, Moseley CB, Nirmal AJ, Pelletier RJ, Maliga Z, Marko-Varga G, Németh IB, Tsao H, Asgari MM, Gusev A, Stagner AM, Lian CG, Hurlbert MS, Liu F, Yu KH, Sorger PK, Semenov YR. Wan G, et al. Among authors: sorger pk. J Am Acad Dermatol. 2024 Feb;90(2):288-298. doi: 10.1016/j.jaad.2023.08.105. Epub 2023 Oct 4. J Am Acad Dermatol. 2024. PMID: 37797836

2

The impact of stage-related features in melanoma recurrence prediction: A machine learning approach.

Wan G, Leung B, Nguyen N, DeSimone MS, Liu F, Choi MS, Ho D, Laucks V, Duey S, Sullivan RJ, Boland GM, LeBoeuf NR, Liu D, Gusev A, Kwatra SG, Sorger PK, Yu KH, Semenov YR. Wan G, et al. Among authors: sorger pk. JAAD Int. 2022 Aug 30;10:28-30. doi: 10.1016/j.jdin.2022.08.014. eCollection 2023 Mar. JAAD Int. 2022. PMID: 36425793 Free PMC article.

3

Immune Profiling of Dermatologic Adverse Events from Checkpoint Blockade Using Tissue Cyclic Immunofluorescence: A Pilot Study.

Maliga Z, Kim DY, Bui AN, Lin JR, Dewan AK, Jadeja S, Murphy GF, Nirmal AJ, Lian CG, Sorger PK, LeBoeuf NR. Maliga Z, et al. Among authors: sorger pk. J Invest Dermatol. 2024 Feb 14:S0022-202X(24)00107-6. doi: 10.1016/j.jid.2024.01.024. Online ahead of print. J Invest Dermatol. 2024. PMID: 38360200 No abstract available.

4

Paired evaluation of machine-learning models characterizes effects of confounders and outliers.

Nariya MK, Mills CE, Sorger PK, Sokolov A. Nariya MK, et al. Among authors: sorger pk. Patterns (N Y). 2023 Jul 7;4(8):100791. doi: 10.1016/j.patter.2023.100791. eCollection 2023 Aug 11. Patterns (N Y). 2023. PMID: 37602225 Free PMC article.

5

Qualification of a multiplexed tissue imaging assay and detection of novel patterns of HER2 heterogeneity in breast cancer.

Guerriero JL, Lin JR, Pastorello RG, Du Z, Chen YA, Townsend MG, Shimada K, Hughes ME, Ren S, Tayob N, Zheng K, Mei S, Patterson A, Taneja KL, Metzger O, Tolaney SM, Lin NU, Dillon DA, Schnitt SJ, Sorger PK, Mittendorf EA, Santagata S. Guerriero JL, et al. Among authors: sorger pk. NPJ Breast Cancer. 2024 Jan 2;10(1):2. doi: 10.1038/s41523-023-00605-3. NPJ Breast Cancer. 2024. PMID: 38167908 Free PMC article.

6

Biphasic JNK-Erk signaling separates the induction and maintenance of cell senescence after DNA damage induced by topoisomerase II inhibition.

Netterfield TS, Ostheimer GJ, Tentner AR, Joughin BA, Dakoyannis AM, Sharma CD, Sorger PK, Janes KA, Lauffenburger DA, Yaffe MB. Netterfield TS, et al. Among authors: sorger pk. Cell Syst. 2023 Jul 19;14(7):582-604.e10. doi: 10.1016/j.cels.2023.06.005. Cell Syst. 2023. PMID: 37473730

7

SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data.

Nirmal AJ, Sorger PK. Nirmal AJ, et al. Among authors: sorger pk. ArXiv [Preprint]. 2024 May 3:arXiv:2405.02076v1. ArXiv. 2024. PMID: 38745703 Free PMC article. Preprint.

8

OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization.

Ahdritz G, Bouatta N, Floristean C, Kadyan S, Xia Q, Gerecke W, O'Donnell TJ, Berenberg D, Fisk I, Zanichelli N, Zhang B, Nowaczynski A, Wang B, Stepniewska-Dziubinska MM, Zhang S, Ojewole A, Guney ME, Biderman S, Watkins AM, Ra S, Lorenzo PR, Nivon L, Weitzner B, Ban YA, Chen S, Zhang M, Li C, Song SL, He Y, Sorger PK, Mostaque E, Zhang Z, Bonneau R, AlQuraishi M. Ahdritz G, et al. Among authors: sorger pk. Nat Methods. 2024 May 14. doi: 10.1038/s41592-024-02272-z. Online ahead of print. Nat Methods. 2024. PMID: 38744917

9

SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data.

Wan G, Maliga Z, Yan B, Vallius T, Shi Y, Khattab S, Chang C, Nirmal AJ, Yu KH, Liu D, Lian CG, DeSimone MS, Sorger PK, Semenov YR. Wan G, et al. Among authors: sorger pk. Brief Bioinform. 2024 Mar 27;25(3):bbae189. doi: 10.1093/bib/bbae189. Brief Bioinform. 2024. PMID: 38701421 Free PMC article.

10

A CRISPRi/a screening platform to study cellular nutrient transport in diverse microenvironments.

Chidley C, Darnell AM, Gaudio BL, Lien EC, Barbeau AM, Vander Heiden MG, Sorger PK. Chidley C, et al. Among authors: sorger pk. Nat Cell Biol. 2024 Apr 11. doi: 10.1038/s41556-024-01402-1. Online ahead of print. Nat Cell Biol. 2024. PMID: 38605144

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