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The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.
Engel P, Kwong WK, McFrederick Q, Anderson KE, Barribeau SM, Chandler JA, Cornman RS, Dainat J, de Miranda JR, Doublet V, Emery O, Evans JD, Farinelli L, Flenniken ML, Granberg F, Grasis JA, Gauthier L, Hayer J, Koch H, Kocher S, Martinson VG, Moran N, Munoz-Torres M, Newton I, Paxton RJ, Powell E, Sadd BM, Schmid-Hempel P, Schmid-Hempel R, Song SJ, Schwarz RS, vanEngelsdorp D, Dainat B. Engel P, et al. Among authors: song sj. mBio. 2016 Apr 26;7(2):e02164-15. doi: 10.1128/mBio.02164-15. mBio. 2016. PMID: 27118586 Free PMC article. Review.
Advancing our understanding of the human microbiome using QIIME.
Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R. Navas-Molina JA, et al. Among authors: song sj. Methods Enzymol. 2013;531:371-444. doi: 10.1016/B978-0-12-407863-5.00019-8. Methods Enzymol. 2013. PMID: 24060131 Free PMC article.
The human microbiome in evolution.
Davenport ER, Sanders JG, Song SJ, Amato KR, Clark AG, Knight R. Davenport ER, et al. Among authors: song sj. BMC Biol. 2017 Dec 27;15(1):127. doi: 10.1186/s12915-017-0454-7. BMC Biol. 2017. PMID: 29282061 Free PMC article. Review.
Our microbial selves: what ecology can teach us.
Gonzalez A, Clemente JC, Shade A, Metcalf JL, Song S, Prithiviraj B, Palmer BE, Knight R. Gonzalez A, et al. EMBO Rep. 2011 Jul 1;12(8):775-84. doi: 10.1038/embor.2011.137. EMBO Rep. 2011. PMID: 21720391 Free PMC article. Review.
Learning representations of microbe-metabolite interactions.
Morton JT, Aksenov AA, Nothias LF, Foulds JR, Quinn RA, Badri MH, Swenson TL, Van Goethem MW, Northen TR, Vazquez-Baeza Y, Wang M, Bokulich NA, Watters A, Song SJ, Bonneau R, Dorrestein PC, Knight R. Morton JT, et al. Among authors: song sj. Nat Methods. 2019 Dec;16(12):1306-1314. doi: 10.1038/s41592-019-0616-3. Epub 2019 Nov 4. Nat Methods. 2019. PMID: 31686038 Free PMC article.
Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats.
Song SJ, Sanders JG, Delsuc F, Metcalf J, Amato K, Taylor MW, Mazel F, Lutz HL, Winker K, Graves GR, Humphrey G, Gilbert JA, Hackett SJ, White KP, Skeen HR, Kurtis SM, Withrow J, Braile T, Miller M, McCracken KG, Maley JM, Ezenwa VO, Williams A, Blanton JM, McKenzie VJ, Knight R. Song SJ, et al. mBio. 2020 Jan 7;11(1):e02901-19. doi: 10.1128/mBio.02901-19. mBio. 2020. PMID: 31911491 Free PMC article.
Characterizing microbial communities through space and time.
Gonzalez A, King A, Robeson MS 2nd, Song S, Shade A, Metcalf JL, Knight R. Gonzalez A, et al. Curr Opin Biotechnol. 2012 Jun;23(3):431-6. doi: 10.1016/j.copbio.2011.11.017. Epub 2011 Dec 7. Curr Opin Biotechnol. 2012. PMID: 22154467 Free PMC article. Review.
The treatment-naive microbiome in new-onset Crohn's disease.
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ. Gevers D, et al. Among authors: song sj. Cell Host Microbe. 2014 Mar 12;15(3):382-392. doi: 10.1016/j.chom.2014.02.005. Cell Host Microbe. 2014. PMID: 24629344 Free PMC article.
Walls talk: Microbial biogeography of homes spanning urbanization.
Ruiz-Calderon JF, Cavallin H, Song SJ, Novoselac A, Pericchi LR, Hernandez JN, Rios R, Branch OH, Pereira H, Paulino LC, Blaser MJ, Knight R, Dominguez-Bello MG. Ruiz-Calderon JF, et al. Among authors: song sj. Sci Adv. 2016 Feb 12;2(2):e1501061. doi: 10.1126/sciadv.1501061. eCollection 2016 Feb. Sci Adv. 2016. PMID: 26933683 Free PMC article.
974 results