Song CX - Search Results

1

DMRT1 regulates human germline commitment.

Irie N, Lee SM, Lorenzi V, Xu H, Chen J, Inoue M, Kobayashi T, Sancho-Serra C, Drousioti E, Dietmann S, Vento-Tormo R, Song CX, Surani MA. Irie N, et al. Among authors: song cx. Nat Cell Biol. 2023 Oct;25(10):1439-1452. doi: 10.1038/s41556-023-01224-7. Epub 2023 Sep 14. Nat Cell Biol. 2023. PMID: 37709822 Free PMC article.

2

Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution.

Liu Y, Hu Z, Cheng J, Siejka-Zielińska P, Chen J, Inoue M, Ahmed AA, Song CX. Liu Y, et al. Among authors: song cx. Nat Commun. 2021 Jan 27;12(1):618. doi: 10.1038/s41467-021-20920-2. Nat Commun. 2021. PMID: 33504799 Free PMC article.

3

Whole-genome long-read TAPS deciphers DNA methylation patterns at base resolution using PacBio SMRT sequencing technology.

Chen J, Cheng J, Chen X, Inoue M, Liu Y, Song CX. Chen J, et al. Among authors: song cx. Nucleic Acids Res. 2022 Oct 14;50(18):e104. doi: 10.1093/nar/gkac612. Nucleic Acids Res. 2022. PMID: 35849350 Free PMC article.

4

Mapping epigenetic modifications by sequencing technologies.

Chen X, Xu H, Shu X, Song CX. Chen X, et al. Among authors: song cx. Cell Death Differ. 2023 Sep 1. doi: 10.1038/s41418-023-01213-1. Online ahead of print. Cell Death Differ. 2023. PMID: 37658169 Review.

5

Modular Oxidation of Cytosine Modifications and Their Application in Direct and Quantitative Sequencing of 5-Hydroxymethylcytosine.

Xu H, Chen J, Cheng J, Kong L, Chen X, Inoue M, Liu Y, Kriaucionis S, Zhao M, Song CX. Xu H, et al. Among authors: song cx. J Am Chem Soc. 2023 Apr 5;145(13):7095-7100. doi: 10.1021/jacs.3c01663. Epub 2023 Mar 24. J Am Chem Soc. 2023. PMID: 36961225 Free PMC article.

6

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages.

Song CX, Yin S, Ma L, Wheeler A, Chen Y, Zhang Y, Liu B, Xiong J, Zhang W, Hu J, Zhou Z, Dong B, Tian Z, Jeffrey SS, Chua MS, So S, Li W, Wei Y, Diao J, Xie D, Quake SR. Song CX, et al. Cell Res. 2017 Oct;27(10):1231-1242. doi: 10.1038/cr.2017.106. Epub 2017 Aug 18. Cell Res. 2017. PMID: 28820176 Free PMC article.

7

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.

Liu Y, Siejka-Zielińska P, Velikova G, Bi Y, Yuan F, Tomkova M, Bai C, Chen L, Schuster-Böckler B, Song CX. Liu Y, et al. Among authors: song cx. Nat Biotechnol. 2019 Apr;37(4):424-429. doi: 10.1038/s41587-019-0041-2. Epub 2019 Feb 25. Nat Biotechnol. 2019. PMID: 30804537

8

Systematic allelic analysis defines the interplay of key pathways in X chromosome inactivation.

Nesterova TB, Wei G, Coker H, Pintacuda G, Bowness JS, Zhang T, Almeida M, Bloechl B, Moindrot B, Carter EJ, Alvarez Rodrigo I, Pan Q, Bi Y, Song CX, Brockdorff N. Nesterova TB, et al. Among authors: song cx. Nat Commun. 2019 Jul 16;10(1):3129. doi: 10.1038/s41467-019-11171-3. Nat Commun. 2019. PMID: 31311937 Free PMC article.

9

Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS.

Liu Y, Cheng J, Siejka-Zielińska P, Weldon C, Roberts H, Lopopolo M, Magri A, D'Arienzo V, Harris JM, McKeating JA, Song CX. Liu Y, et al. Among authors: song cx. Genome Biol. 2020 Mar 3;21(1):54. doi: 10.1186/s13059-020-01969-6. Genome Biol. 2020. PMID: 32127008 Free PMC article.

10

Subtelomeric hotspots of aberrant 5-hydroxymethylcytosine-mediated epigenetic modifications during reprogramming to pluripotency.

Wang T, Wu H, Li Y, Szulwach KE, Lin L, Li X, Chen IP, Goldlust IS, Chamberlain SJ, Dodd A, Gong H, Ananiev G, Han JW, Yoon YS, Rudd MK, Yu M, Song CX, He C, Chang Q, Warren ST, Jin P. Wang T, et al. Among authors: song cx. Nat Cell Biol. 2013 Jun;15(6):700-11. doi: 10.1038/ncb2748. Epub 2013 May 19. Nat Cell Biol. 2013. PMID: 23685628 Free PMC article.

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