Song CX - Search Results

1

Modular Oxidation of Cytosine Modifications and Their Application in Direct and Quantitative Sequencing of 5-Hydroxymethylcytosine.

Xu H, Chen J, Cheng J, Kong L, Chen X, Inoue M, Liu Y, Kriaucionis S, Zhao M, Song CX. Xu H, et al. Among authors: song cx. J Am Chem Soc. 2023 Apr 5;145(13):7095-7100. doi: 10.1021/jacs.3c01663. Epub 2023 Mar 24. J Am Chem Soc. 2023. PMID: 36961225 Free PMC article.

2

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.

Liu Y, Siejka-Zielińska P, Velikova G, Bi Y, Yuan F, Tomkova M, Bai C, Chen L, Schuster-Böckler B, Song CX. Liu Y, et al. Among authors: song cx. Nat Biotechnol. 2019 Apr;37(4):424-429. doi: 10.1038/s41587-019-0041-2. Epub 2019 Feb 25. Nat Biotechnol. 2019. PMID: 30804537

3

Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS.

Liu Y, Cheng J, Siejka-Zielińska P, Weldon C, Roberts H, Lopopolo M, Magri A, D'Arienzo V, Harris JM, McKeating JA, Song CX. Liu Y, et al. Among authors: song cx. Genome Biol. 2020 Mar 3;21(1):54. doi: 10.1186/s13059-020-01969-6. Genome Biol. 2020. PMID: 32127008 Free PMC article.

4

Mapping the epigenetic modifications of DNA and RNA.

Zhao LY, Song J, Liu Y, Song CX, Yi C. Zhao LY, et al. Among authors: song j, song cx. Protein Cell. 2020 Nov;11(11):792-808. doi: 10.1007/s13238-020-00733-7. Epub 2020 May 22. Protein Cell. 2020. PMID: 32440736 Free PMC article. Review.

5

Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution.

Liu Y, Hu Z, Cheng J, Siejka-Zielińska P, Chen J, Inoue M, Ahmed AA, Song CX. Liu Y, et al. Among authors: song cx. Nat Commun. 2021 Jan 27;12(1):618. doi: 10.1038/s41467-021-20920-2. Nat Commun. 2021. PMID: 33504799 Free PMC article.

6

Endonuclease enrichment TAPS for cost-effective genome-wide base-resolution DNA methylation detection.

Cheng J, Siejka-Zielińska P, Liu Y, Chandran A, Kriaucionis S, Song CX. Cheng J, et al. Among authors: song cx. Nucleic Acids Res. 2021 Jul 21;49(13):e76. doi: 10.1093/nar/gkab291. Nucleic Acids Res. 2021. PMID: 33905495 Free PMC article.

7

Cell-free DNA TAPS provides multimodal information for early cancer detection.

Siejka-Zielińska P, Cheng J, Jackson F, Liu Y, Soonawalla Z, Reddy S, Silva M, Puta L, McCain MV, Culver EL, Bekkali N, Schuster-Böckler B, Palamara PF, Mann D, Reeves H, Barnes E, Sivakumar S, Song CX. Siejka-Zielińska P, et al. Among authors: song cx. Sci Adv. 2021 Sep 3;7(36):eabh0534. doi: 10.1126/sciadv.abh0534. Epub 2021 Sep 1. Sci Adv. 2021. PMID: 34516908 Free PMC article.

8

Whole-genome long-read TAPS deciphers DNA methylation patterns at base resolution using PacBio SMRT sequencing technology.

Chen J, Cheng J, Chen X, Inoue M, Liu Y, Song CX. Chen J, et al. Among authors: song cx. Nucleic Acids Res. 2022 Oct 14;50(18):e104. doi: 10.1093/nar/gkac612. Nucleic Acids Res. 2022. PMID: 35849350 Free PMC article.

9

TAPS: The Development of a Direct and Base-Resolution Sequencing Method for DNA Methylation.

Liu Y, Song CX. Liu Y, et al. Among authors: song cx. ACS Chem Biol. 2022 Oct 21;17(10):2683-2685. doi: 10.1021/acschembio.2c00746. Epub 2022 Oct 4. ACS Chem Biol. 2022. PMID: 36194499 No abstract available.

10

Mapping epigenetic modifications by sequencing technologies.

Chen X, Xu H, Shu X, Song CX. Chen X, et al. Among authors: song cx. Cell Death Differ. 2023 Sep 1. doi: 10.1038/s41418-023-01213-1. Online ahead of print. Cell Death Differ. 2023. PMID: 37658169 Review.

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