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Page 1
Functional footprinting of regulatory DNA.
Vierstra J, Reik A, Chang KH, Stehling-Sun S, Zhou Y, Hinkley SJ, Paschon DE, Zhang L, Psatha N, Bendana YR, O'Neil CM, Song AH, Mich AK, Liu PQ, Lee G, Bauer DE, Holmes MC, Orkin SH, Papayannopoulou T, Stamatoyannopoulos G, Rebar EJ, Gregory PD, Urnov FD, Stamatoyannopoulos JA. Vierstra J, et al. Among authors: song ah. Nat Methods. 2015 Oct;12(10):927-30. doi: 10.1038/nmeth.3554. Epub 2015 Aug 31. Nat Methods. 2015. PMID: 26322838 Free PMC article.
Targeted gene addition in human CD34(+) hematopoietic cells for correction of X-linked chronic granulomatous disease.
De Ravin SS, Reik A, Liu PQ, Li L, Wu X, Su L, Raley C, Theobald N, Choi U, Song AH, Chan A, Pearl JR, Paschon DE, Lee J, Newcombe H, Koontz S, Sweeney C, Shivak DA, Zarember KA, Peshwa MV, Gregory PD, Urnov FD, Malech HL. De Ravin SS, et al. Among authors: song ah. Nat Biotechnol. 2016 Apr;34(4):424-9. doi: 10.1038/nbt.3513. Epub 2016 Mar 7. Nat Biotechnol. 2016. PMID: 26950749 Free PMC article.
Analysis of 3D pathology samples using weakly supervised AI.
Song AH, Williams M, Williamson DFK, Chow SSL, Jaume G, Gao G, Zhang A, Chen B, Baras AS, Serafin R, Colling R, Downes MR, Farré X, Humphrey P, Verrill C, True LD, Parwani AV, Liu JTC, Mahmood F. Song AH, et al. Cell. 2024 May 9;187(10):2502-2520.e17. doi: 10.1016/j.cell.2024.03.035. Cell. 2024. PMID: 38729110
Demographic bias in misdiagnosis by computational pathology models.
Vaidya A, Chen RJ, Williamson DFK, Song AH, Jaume G, Yang Y, Hartvigsen T, Dyer EC, Lu MY, Lipkova J, Shaban M, Chen TY, Mahmood F. Vaidya A, et al. Among authors: song ah. Nat Med. 2024 Apr;30(4):1174-1190. doi: 10.1038/s41591-024-02885-z. Epub 2024 Apr 19. Nat Med. 2024. PMID: 38641744
Towards a general-purpose foundation model for computational pathology.
Chen RJ, Ding T, Lu MY, Williamson DFK, Jaume G, Song AH, Chen B, Zhang A, Shao D, Shaban M, Williams M, Oldenburg L, Weishaupt LL, Wang JJ, Vaidya A, Le LP, Gerber G, Sahai S, Williams W, Mahmood F. Chen RJ, et al. Among authors: song ah. Nat Med. 2024 Mar;30(3):850-862. doi: 10.1038/s41591-024-02857-3. Epub 2024 Mar 19. Nat Med. 2024. PMID: 38504018
Study protocol: phase II study to evaluate the effect of cetuximab monotherapy after immunotherapy with PD-1 inhibitors in patients with head and neck squamous cell cancer.
Burcher KM, Bloomer CH, Gavrila E, Kalada JM, Chang MJ, Gebeyehu RR, Song AH, Khoury LM, Lycan TW, Kinney R, D'Agostino R Jr, Bunch PM, Shukla K, Triozzi P, Furdui CM, Zhang W, Porosnicu M. Burcher KM, et al. Among authors: song ah. Ther Adv Med Oncol. 2024 Jan 19;16:17588359231217959. doi: 10.1177/17588359231217959. eCollection 2024. Ther Adv Med Oncol. 2024. PMID: 38249330 Free PMC article.
A General-Purpose Self-Supervised Model for Computational Pathology.
Chen RJ, Ding T, Lu MY, Williamson DFK, Jaume G, Chen B, Zhang A, Shao D, Song AH, Shaban M, Williams M, Vaidya A, Sahai S, Oldenburg L, Weishaupt LL, Wang JJ, Williams W, Le LP, Gerber G, Mahmood F. Chen RJ, et al. Among authors: song ah. ArXiv [Preprint]. 2023 Aug 29:arXiv:2308.15474v1. ArXiv. 2023. PMID: 37693180 Free PMC article. Preprint.
52 results