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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding.
Wang K, Stevens R, Alachram H, Li Y, Soldatova L, King R, Ananiadou S, Schoene AM, Li M, Christopoulou F, Ambite JL, Matthew J, Garg S, Hermjakob U, Marcu D, Sheng E, Beißbarth T, Wingender E, Galstyan A, Gao X, Chambers B, Pan W, Khomtchouk BB, Evans JA, Rzhetsky A. Wang K, et al. Among authors: soldatova l. NPJ Syst Biol Appl. 2021 Oct 20;7(1):38. doi: 10.1038/s41540-021-00200-x. NPJ Syst Biol Appl. 2021. PMID: 34671039 Free PMC article.
An ontology for a Robot Scientist.
Soldatova LN, Clare A, Sparkes A, King RD. Soldatova LN, et al. Bioinformatics. 2006 Jul 15;22(14):e464-71. doi: 10.1093/bioinformatics/btl207. Bioinformatics. 2006. PMID: 16873508
An ontology of scientific experiments.
Soldatova LN, King RD. Soldatova LN, et al. J R Soc Interface. 2006 Dec 22;3(11):795-803. doi: 10.1098/rsif.2006.0134. J R Soc Interface. 2006. PMID: 17015305 Free PMC article.
Overhauling the PDB.
Schierz AC, Soldatova LN, King RD. Schierz AC, et al. Nat Biotechnol. 2007 Apr;25(4):437-42. doi: 10.1038/nbt0407-437. Nat Biotechnol. 2007. PMID: 17420753 No abstract available.
The EXACT description of biomedical protocols.
Soldatova LN, Aubrey W, King RD, Clare A. Soldatova LN, et al. Bioinformatics. 2008 Jul 1;24(13):i295-303. doi: 10.1093/bioinformatics/btn156. Bioinformatics. 2008. PMID: 18586727 Free PMC article.
An ontology for description of drug discovery investigations.
Qi D, King RD, Hopkins AL, Bickerton GR, Soldatova LN. Qi D, et al. Among authors: soldatova ln. J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-126. J Integr Bioinform. 2010. PMID: 20375446 Free article.
On the formalization and reuse of scientific research.
King RD, Liakata M, Lu C, Oliver SG, Soldatova LN. King RD, et al. J R Soc Interface. 2011 Oct 7;8(63):1440-8. doi: 10.1098/rsif.2011.0029. Epub 2011 Apr 13. J R Soc Interface. 2011. PMID: 21490004 Free PMC article.
Representation of research hypotheses.
Soldatova LN, Rzhetsky A. Soldatova LN, et al. J Biomed Semantics. 2011 May 17;2 Suppl 2(Suppl 2):S9. doi: 10.1186/2041-1480-2-S2-S9. J Biomed Semantics. 2011. PMID: 21624164 Free PMC article.
Representation of probabilistic scientific knowledge.
Soldatova LN, Rzhetsky A, De Grave K, King RD. Soldatova LN, et al. J Biomed Semantics. 2013 Apr 15;4 Suppl 1(Suppl 1):S7. doi: 10.1186/2041-1480-4-S1-S7. Epub 2013 Apr 15. J Biomed Semantics. 2013. PMID: 23734675 Free PMC article.
86 results