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REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
Nat Methods. 2021 Dec;18(12):1418-1422. doi: 10.1038/s41592-021-01166-8.
Nat Methods. 2021.
PMID: 34021280
Free PMC article.
Mapping brain activity at scale with cluster computing.
Freeman J, Vladimirov N, Kawashima T, Mu Y, Sofroniew NJ, Bennett DV, Rosen J, Yang CT, Looger LL, Ahrens MB.
Freeman J, et al. Among authors: sofroniew nj.
Nat Methods. 2014 Sep;11(9):941-50. doi: 10.1038/nmeth.3041. Epub 2014 Jul 27.
Nat Methods. 2014.
PMID: 25068736
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Neural coding in barrel cortex during whisker-guided locomotion.
Sofroniew NJ, Vlasov YA, Hires SA, Freeman J, Svoboda K.
Sofroniew NJ, et al.
Elife. 2015 Dec 23;4:e12559. doi: 10.7554/eLife.12559.
Elife. 2015.
PMID: 26701910
Free PMC article.
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Q&A: The brain under a mesoscope: the forest and the trees.
Sofroniew NJ.
Sofroniew NJ.
BMC Biol. 2017 Sep 14;15(1):82. doi: 10.1186/s12915-017-0426-y.
BMC Biol. 2017.
PMID: 28911321
Free PMC article.
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A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Sofroniew NJ, Flickinger D, King J, Svoboda K.
Sofroniew NJ, et al.
Elife. 2016 Jun 14;5:e14472. doi: 10.7554/eLife.14472.
Elife. 2016.
PMID: 27300105
Free PMC article.
Item in Clipboard
Natural whisker-guided behavior by head-fixed mice in tactile virtual reality.
Sofroniew NJ, Cohen JD, Lee AK, Svoboda K.
Sofroniew NJ, et al.
J Neurosci. 2014 Jul 16;34(29):9537-50. doi: 10.1523/JNEUROSCI.0712-14.2014.
J Neurosci. 2014.
PMID: 25031397
Free PMC article.
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Whisking.
Sofroniew NJ, Svoboda K.
Sofroniew NJ, et al.
Curr Biol. 2015 Feb 16;25(4):R137-40. doi: 10.1016/j.cub.2015.01.008.
Curr Biol. 2015.
PMID: 25689904
Free article.
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Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge M.
Berens P, et al. Among authors: sofroniew nj.
PLoS Comput Biol. 2018 May 21;14(5):e1006157. doi: 10.1371/journal.pcbi.1006157. eCollection 2018 May.
PLoS Comput Biol. 2018.
PMID: 29782491
Free PMC article.
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