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Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm.
Ong-Abdullah M, Ordway JM, Jiang N, Ooi SE, Kok SY, Sarpan N, Azimi N, Hashim AT, Ishak Z, Rosli SK, Malike FA, Bakar NA, Marjuni M, Abdullah N, Yaakub Z, Amiruddin MD, Nookiah R, Singh R, Low ET, Chan KL, Azizi N, Smith SW, Bacher B, Budiman MA, Van Brunt A, Wischmeyer C, Beil M, Hogan M, Lakey N, Lim CC, Arulandoo X, Wong CK, Choo CN, Wong WC, Kwan YY, Alwee SS, Sambanthamurthi R, Martienssen RA. Ong-Abdullah M, et al. Among authors: smith sw. Nature. 2015 Sep 24;525(7570):533-7. doi: 10.1038/nature15365. Epub 2015 Sep 9. Nature. 2015. PMID: 26352475 Free PMC article.
Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.
Singh R, Ong-Abdullah M, Low ET, Manaf MA, Rosli R, Nookiah R, Ooi LC, Ooi SE, Chan KL, Halim MA, Azizi N, Nagappan J, Bacher B, Lakey N, Smith SW, He D, Hogan M, Budiman MA, Lee EK, DeSalle R, Kudrna D, Goicoechea JL, Wing RA, Wilson RK, Fulton RS, Ordway JM, Martienssen RA, Sambanthamurthi R. Singh R, et al. Among authors: smith sw. Nature. 2013 Aug 15;500(7462):335-9. doi: 10.1038/nature12309. Epub 2013 Jul 24. Nature. 2013. PMID: 23883927 Free PMC article.
The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK.
Singh R, Low ET, Ooi LC, Ong-Abdullah M, Ting NC, Nagappan J, Nookiah R, Amiruddin MD, Rosli R, Manaf MA, Chan KL, Halim MA, Azizi N, Lakey N, Smith SW, Budiman MA, Hogan M, Bacher B, Van Brunt A, Wang C, Ordway JM, Sambanthamurthi R, Martienssen RA. Singh R, et al. Among authors: smith sw. Nature. 2013 Aug 15;500(7462):340-4. doi: 10.1038/nature12356. Epub 2013 Jul 24. Nature. 2013. PMID: 23883930 Free PMC article.
The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB.
Singh R, Low ET, Ooi LC, Ong-Abdullah M, Nookiah R, Ting NC, Marjuni M, Chan PL, Ithnin M, Manaf MA, Nagappan J, Chan KL, Rosli R, Halim MA, Azizi N, Budiman MA, Lakey N, Bacher B, Van Brunt A, Wang C, Hogan M, He D, MacDonald JD, Smith SW, Ordway JM, Martienssen RA, Sambanthamurthi R. Singh R, et al. Among authors: smith sw. Nat Commun. 2014 Jun 30;5:4106. doi: 10.1038/ncomms5106. Nat Commun. 2014. PMID: 24978855 Free PMC article.
Variation for heterodimerization and nuclear localization among known and novel oil palm SHELL alleles.
Singh R, Low EL, Ooi LC, Ong-Abdullah M, Ting NC, Nookiah R, Ithnin M, Marjuni M, Mustaffa S, Yaakub Z, Amiruddin MD, Manaf MAA, Chan KL, Halim MAA, Sanusi NSNM, Lakey N, Sachdeva M, Bacher B, Garner PA, MacDonald JD, Smith SW, Wischmeyer C, Budiman MA, Beil M, Stroff C, Reed J, Van Brunt A, Berg H, Ordway JM, Sambanthamurthi R. Singh R, et al. Among authors: smith sw. New Phytol. 2020 Apr;226(2):426-440. doi: 10.1111/nph.16387. Epub 2020 Jan 28. New Phytol. 2020. PMID: 31863488 Free article.
Non-tenera Contamination and the Economic Impact of SHELL Genetic Testing in the Malaysian Independent Oil Palm Industry.
Ooi LC, Low ET, Abdullah MO, Nookiah R, Ting NC, Nagappan J, Manaf MA, Chan KL, Halim MA, Azizi N, Omar W, Murad AJ, Lakey N, Ordway JM, Favello A, Budiman MA, Van Brunt A, Beil M, Leininger MT, Jiang N, Smith SW, Brown CR, Kuek AC, Bahrain S, Hoynes-O'Connor A, Nguyen AY, Chaudhari HG, Shah SA, Choo YM, Sambanthamurthi R, Singh R. Ooi LC, et al. Among authors: smith sw. Front Plant Sci. 2016 Jun 21;7:771. doi: 10.3389/fpls.2016.00771. eCollection 2016. Front Plant Sci. 2016. PMID: 27446094 Free PMC article.
DNA methylation in personalized medicine.
Budiman MA, Smith SW, Ordway JM. Budiman MA, et al. Among authors: smith sw. Per Med. 2011 Jan;8(1):35-43. doi: 10.2217/pme.10.72. Per Med. 2011. PMID: 29768784
Reading tea leaves worldwide: Decoupled drivers of initial litter decomposition mass-loss rate and stabilization.
Sarneel JM, Hefting MM, Sandén T, van den Hoogen J, Routh D, Adhikari BS, Alatalo JM, Aleksanyan A, Althuizen IHJ, Alsafran MHSA, Atkins JW, Augusto L, Aurela M, Azarov AV, Barrio IC, Beier C, Bejarano MD, Benham SE, Berg B, Bezler NV, Björnsdóttir K, Bolinder MA, Carbognani M, Cazzolla Gatti R, Chelli S, Chistotin MV, Christiansen CT, Courtois P, Crowther TW, Dechoum MS, Djukic I, Duddigan S, Egerton-Warburton LM, Fanin N, Fantappiè M, Fares S, Fernandes GW, Filippova NV, Fliessbach A, Fuentes D, Godoy R, Grünwald T, Guzmán G, Hawes JE, He Y, Hero JM, Hess LL, Hogendoorn K, Høye TT, Jans WWP, Jónsdóttir IS, Keller S, Kepfer-Rojas S, Kuz'menko NN, Larsen KS, Laudon H, Lembrechts JJ, Li J, Limousin JM, Lukin SM, Marques R, Marín C, McDaniel MD, Meek Q, Merzlaya GE, Michelsen A, Montagnani L, Mueller P, Murugan R, Myers-Smith IH, Nolte S, Ochoa-Hueso R, Okafor BN, Okorkov VV, Onipchenko VG, Orozco MC, Parkhurst T, Peres CA, Petit Bon M, Petraglia A, Pingel M, Rebmann C, Scheffers BR, Schmidt I, Scholes MC, Sheffer E, Shevtsova LK, Smith SW, Sofo A, Stevenson PR, Strouhalová B, Sundsdal A, Sühs RB, Tamene G, Thomas HJD, Tolunay D, Tomaselli M, Tresch S, Tucker DL, Ulyshen MD, … See abstract for full author list ➔ Sarneel JM, et al. Among authors: smith sw. Ecol Lett. 2024 May;27(5):e14415. doi: 10.1111/ele.14415. Ecol Lett. 2024. PMID: 38712683
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