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A community-developed open-source computational ecosystem for big neuro data.
Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R Jr, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R. Vogelstein JT, et al. Among authors: smith sj. Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1. Nat Methods. 2018. PMID: 30377345 Free PMC article. No abstract available.
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.
Burns R, Roncal WG, Kleissas D, Lillaney K, Manavalan P, Perlman E, Berger DR, Bock DD, Chung K, Grosenick L, Kasthuri N, Weiler NC, Deisseroth K, Kazhdan M, Lichtman J, Reid RC, Smith SJ, Szalay AS, Vogelstein JT, Vogelstein RJ. Burns R, et al. Among authors: smith sj. Sci Stat Database Manag. 2013:10.1145/2484838.2484870. doi: 10.1145/2484838.2484870. Sci Stat Database Manag. 2013. PMID: 24401992 Free PMC article.
Mapping synapses by conjugate light-electron array tomography.
Collman F, Buchanan J, Phend KD, Micheva KD, Weinberg RJ, Smith SJ. Collman F, et al. Among authors: smith sj. J Neurosci. 2015 Apr 8;35(14):5792-807. doi: 10.1523/JNEUROSCI.4274-14.2015. J Neurosci. 2015. PMID: 25855189 Free PMC article.
Knowing a synapse when you see one.
Burette A, Collman F, Micheva KD, Smith SJ, Weinberg RJ. Burette A, et al. Among authors: smith sj. Front Neuroanat. 2015 Jul 28;9:100. doi: 10.3389/fnana.2015.00100. eCollection 2015. Front Neuroanat. 2015. PMID: 26283929 Free PMC article.
Probabilistic fluorescence-based synapse detection.
Simhal AK, Aguerrebere C, Collman F, Vogelstein JT, Micheva KD, Weinberg RJ, Smith SJ, Sapiro G. Simhal AK, et al. Among authors: smith sj. PLoS Comput Biol. 2017 Apr 17;13(4):e1005493. doi: 10.1371/journal.pcbi.1005493. eCollection 2017 Apr. PLoS Comput Biol. 2017. PMID: 28414801 Free PMC article.
A scalable and modular automated pipeline for stitching of large electron microscopy datasets.
Mahalingam G, Torres R, Kapner D, Trautman ET, Fliss T, Seshamani S, Perlman E, Young R, Kinn S, Buchanan J, Takeno MM, Yin W, Bumbarger DJ, Gwinn RP, Nyhus J, Lein E, Smith SJ, Reid RC, Khairy KA, Saalfeld S, Collman F, Macarico da Costa N. Mahalingam G, et al. Among authors: smith sj. Elife. 2022 Jul 26;11:e76534. doi: 10.7554/eLife.76534. Elife. 2022. PMID: 35880860 Free PMC article.
1,105 results