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Gene-wide identification of episodic selection.
Murrell B, Weaver S, Smith MD, Wertheim JO, Murrell S, Aylward A, Eren K, Pollner T, Martin DP, Smith DM, Scheffler K, Kosakovsky Pond SL. Murrell B, et al. Among authors: smith md, smith dm. Mol Biol Evol. 2015 May;32(5):1365-71. doi: 10.1093/molbev/msv035. Epub 2015 Feb 19. Mol Biol Evol. 2015. PMID: 25701167 Free PMC article.
Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection.
Frost SD, Wrin T, Smith DM, Kosakovsky Pond SL, Liu Y, Paxinos E, Chappey C, Galovich J, Beauchaine J, Petropoulos CJ, Little SJ, Richman DD. Frost SD, et al. Among authors: smith dm. Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18514-9. doi: 10.1073/pnas.0504658102. Epub 2005 Dec 9. Proc Natl Acad Sci U S A. 2005. PMID: 16339909 Free PMC article.
Estimating selection pressures on HIV-1 using phylogenetic likelihood models.
Kosakovsky Pond SL, Poon AF, Zárate S, Smith DM, Little SJ, Pillai SK, Ellis RJ, Wong JK, Leigh Brown AJ, Richman DD, Frost SD. Kosakovsky Pond SL, et al. Among authors: smith dm. Stat Med. 2008 Oct 15;27(23):4779-89. doi: 10.1002/sim.3192. Stat Med. 2008. PMID: 18381707 Free PMC article.
Active methamphetamine use is associated with transmitted drug resistance to non-nucleoside reverse transcriptase inhibitors in individuals with HIV infection of unknown duration.
Cachay ER, Moini N, Kosakovsky Pond SL, Pesano R, Lie YS, Aiem H, Butler DM, Letendre S, Mathews WC, Smith DM. Cachay ER, et al. Among authors: smith dm. Open AIDS J. 2007;1:5-10. doi: 10.2174/1874613600701010005. Epub 2007 Oct 22. Open AIDS J. 2007. PMID: 18923691 Free PMC article.
The origins of sexually transmitted HIV among men who have sex with men.
Butler DM, Delport W, Kosakovsky Pond SL, Lakdawala MK, Cheng PM, Little SJ, Richman DD, Smith DM. Butler DM, et al. Among authors: smith dm. Sci Transl Med. 2010 Feb 10;2(18):18re1. doi: 10.1126/scitranslmed.3000447. Sci Transl Med. 2010. PMID: 20371483 Free PMC article.
1,801 results