Sjödin A - Search Results

1

FlexTaxD: flexible modification of taxonomy databases for improved sequence classification.

Sundell D, Öhrman C, Svensson D, Karlsson E, Brindefalk B, Myrtennäs K, Ahlinder J, Antwerpen MH, Walter MC, Forsman M, Stenberg P, Sjödin A. Sundell D, et al. Among authors: sjodin a. Bioinformatics. 2021 Nov 5;37(21):3932-3933. doi: 10.1093/bioinformatics/btab621. Bioinformatics. 2021. PMID: 34469515

2

Whole-genome sequencing reveals distinct mutational patterns in closely related laboratory and naturally propagated Francisella tularensis strains.

Sjödin A, Svensson K, Lindgren M, Forsman M, Larsson P. Sjödin A, et al. PLoS One. 2010 Jul 19;5(7):e11556. doi: 10.1371/journal.pone.0011556. PLoS One. 2010. PMID: 20657845 Free PMC article.

3

Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish.

Sjödin A, Svensson K, Ohrman C, Ahlinder J, Lindgren P, Duodu S, Johansson A, Colquhoun DJ, Larsson P, Forsman M. Sjödin A, et al. BMC Genomics. 2012 Jun 22;13:268. doi: 10.1186/1471-2164-13-268. BMC Genomics. 2012. PMID: 22727144 Free PMC article.

4

Increased knowledge of Francisella genus diversity highlights the benefits of optimised DNA-based assays.

Ahlinder J, Öhrman C, Svensson K, Lindgren P, Johansson A, Forsman M, Larsson P, Sjödin A. Ahlinder J, et al. Among authors: sjodin a. BMC Microbiol. 2012 Sep 25;12:220. doi: 10.1186/1471-2180-12-220. BMC Microbiol. 2012. PMID: 23009728 Free PMC article.

5

Genome sequence of Francisella tularensis subspecies holarctica strain FSC200, isolated from a child with tularemia.

Svensson K, Sjödin A, Byström M, Granberg M, Brittnacher MJ, Rohmer L, Jacobs MA, Sims-Day EH, Levy R, Zhou Y, Hayden HS, Lim R, Chang J, Guenthener D, Kang A, Haugen E, Gillett W, Kaul R, Forsman M, Larsson P, Johansson A. Svensson K, et al. Among authors: sjodin a. J Bacteriol. 2012 Dec;194(24):6965-6. doi: 10.1128/JB.01040-12. J Bacteriol. 2012. PMID: 23209222 Free PMC article.

6

The phylogeographic pattern of Francisella tularensis in Sweden indicates a Scandinavian origin of Eurosiberian tularaemia.

Karlsson E, Svensson K, Lindgren P, Byström M, Sjödin A, Forsman M, Johansson A. Karlsson E, et al. Among authors: sjodin a. Environ Microbiol. 2013 Feb;15(2):634-45. doi: 10.1111/1462-2920.12052. Epub 2012 Dec 16. Environ Microbiol. 2013. PMID: 23253075

7

Eight new genomes and synthetic controls increase the accessibility of rapid melt-MAMA SNP typing of Coxiella burnetii.

Karlsson E, Macellaro A, Byström M, Forsman M, Frangoulidis D, Janse I, Larsson P, Lindgren P, Ohrman C, van Rotterdam B, Sjödin A, Myrtennäs K. Karlsson E, et al. Among authors: sjodin a. PLoS One. 2014 Jan 21;9(1):e85417. doi: 10.1371/journal.pone.0085417. eCollection 2014. PLoS One. 2014. PMID: 24465554 Free PMC article.

8

Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177.

Coolen JP, Sjödin A, Maraha B, Hajer GF, Forsman M, Verspui E, Frenay HM, Notermans DW, de Vries MC, Reubsaet FA, Paauw A, Roeselers G. Coolen JP, et al. Among authors: sjodin a. Stand Genomic Sci. 2013 Aug 10;8(3):539-47. doi: 10.4056/sigs.4217923. eCollection 2013 Jul 30. Stand Genomic Sci. 2013. PMID: 24501637 Free PMC article.

9

CanSNPer: a hierarchical genotype classifier of clonal pathogens.

Lärkeryd A, Myrtennäs K, Karlsson E, Dwibedi CK, Forsman M, Larsson P, Johansson A, Sjödin A. Lärkeryd A, et al. Among authors: sjodin a. Bioinformatics. 2014 Jun 15;30(12):1762-4. doi: 10.1093/bioinformatics/btu113. Epub 2014 Feb 25. Bioinformatics. 2014. PMID: 24574113

10

Complete Genome Sequence of Francisella endociliophora Strain FSC1006, Isolated from a Laboratory Culture of the Marine Ciliate Euplotes raikovi.

Sjödin A, Ohrman C, Bäckman S, Lärkeryd A, Granberg M, Lundmark E, Karlsson E, Nilsson E, Vallesi A, Tellgren-Roth C, Stenberg P, Thelaus J. Sjödin A, et al. Genome Announc. 2014 Nov 26;2(6):e01227-14. doi: 10.1128/genomeA.01227-14. Genome Announc. 2014. PMID: 25428973 Free PMC article.

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