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Functional annotation of human long noncoding RNAs via molecular phenotyping.
Genome Res. 2020 Jul;30(7):1060-1072. doi: 10.1101/gr.254219.119. Epub 2020 Jul 27.
Genome Res. 2020.
PMID: 32718982
Free PMC article.
The essentiality of non-coding RNAs in cell reprogramming.
Luginbühl J, Sivaraman DM, Shin JW.
Luginbühl J, et al. Among authors: sivaraman dm.
Noncoding RNA Res. 2017 Apr 13;2(1):74-82. doi: 10.1016/j.ncrna.2017.04.002. eCollection 2017 Mar.
Noncoding RNA Res. 2017.
PMID: 30159423
Free PMC article.
Review.
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Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq.
Luginbühl J, Kouno T, Nakano R, Chater TE, Sivaraman DM, Kishima M, Roudnicky F, Carninci P, Plessy C, Shin JW.
Luginbühl J, et al. Among authors: sivaraman dm.
Stem Cell Reports. 2021 Apr 13;16(4):810-824. doi: 10.1016/j.stemcr.2021.02.006. Epub 2021 Mar 11.
Stem Cell Reports. 2021.
PMID: 33711266
Free PMC article.
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Functional annotation of lncRNA in high-throughput screening.
Yip CW, Sivaraman DM, Prabhu AV, Shin JW.
Yip CW, et al. Among authors: sivaraman dm.
Essays Biochem. 2021 Oct 27;65(4):761-773. doi: 10.1042/EBC20200061.
Essays Biochem. 2021.
PMID: 33835127
Free PMC article.
Review.
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Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.
Yip CW, Hon CC, Yasuzawa K, Sivaraman DM, Ramilowski JA, Shibayama Y, Agrawal S, Prabhu AV, Parr C, Severin J, Lan YJ, Dostie J, Petri A, Nishiyori-Sueki H, Tagami M, Itoh M, López-Redondo F, Kouno T, Chang JC, Luginbühl J, Kato M, Murata M, Yip WH, Shu X, Abugessaisa I, Hasegawa A, Suzuki H, Kauppinen S, Yagi K, Okazaki Y, Kasukawa T, de Hoon M, Carninci P, Shin JW.
Yip CW, et al. Among authors: sivaraman dm.
Cell Rep. 2022 Dec 27;41(13):111893. doi: 10.1016/j.celrep.2022.111893.
Cell Rep. 2022.
PMID: 36577377
Free article.
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Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors.
Dileep KV, Sakai N, Ihara K, Kato-Murayama M, Nakata A, Ito A, Sivaraman DM, Shin JW, Yoshida M, Shirouzu M, Zhang KYJ.
Dileep KV, et al. Among authors: sivaraman dm.
Int J Biol Macromol. 2021 Feb 15;170:415-423. doi: 10.1016/j.ijbiomac.2020.12.118. Epub 2020 Dec 27.
Int J Biol Macromol. 2021.
PMID: 33373636
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Immortalized functional endothelial progenitor cell lines from umbilical cord blood for vascular tissue engineering.
Sobhan PK, Seervi M, Joseph J, Varghese S, Pillai PR, Sivaraman DM, James J, George RE, Elizabeth KE, Santhoshkumar TR, Pillai MR.
Sobhan PK, et al. Among authors: sivaraman dm.
Tissue Eng Part C Methods. 2012 Nov;18(11):890-902. doi: 10.1089/ten.TEC.2011.0482. Epub 2012 Oct 1.
Tissue Eng Part C Methods. 2012.
PMID: 22889128
Free PMC article.
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A hyperdynamic H3.3 nucleosome marks promoter regions in pluripotent embryonic stem cells.
Schlesinger S, Kaffe B, Melcer S, Aguilera JD, Sivaraman DM, Kaplan T, Meshorer E.
Schlesinger S, et al. Among authors: sivaraman dm.
Nucleic Acids Res. 2017 Dec 1;45(21):12181-12194. doi: 10.1093/nar/gkx817.
Nucleic Acids Res. 2017.
PMID: 29036702
Free PMC article.
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