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Guiding the choice of informatics software and tools for lipidomics research applications.
Ni Z, Wölk M, Jukes G, Mendivelso Espinosa K, Ahrends R, Aimo L, Alvarez-Jarreta J, Andrews S, Andrews R, Bridge A, Clair GC, Conroy MJ, Fahy E, Gaud C, Goracci L, Hartler J, Hoffmann N, Kopczyinki D, Korf A, Lopez-Clavijo AF, Malik A, Ackerman JM, Molenaar MR, O'Donovan C, Pluskal T, Shevchenko A, Slenter D, Siuzdak G, Kutmon M, Tsugawa H, Willighagen EL, Xia J, O'Donnell VB, Fedorova M. Ni Z, et al. Among authors: siuzdak g. Nat Methods. 2023 Feb;20(2):193-204. doi: 10.1038/s41592-022-01710-0. Epub 2022 Dec 21. Nat Methods. 2023. PMID: 36543939 Free PMC article. Review.
Clathrate nanostructures for mass spectrometry.
Northen TR, Yanes O, Northen MT, Marrinucci D, Uritboonthai W, Apon J, Golledge SL, Nordström A, Siuzdak G. Northen TR, et al. Among authors: siuzdak g. Nature. 2007 Oct 25;449(7165):1033-6. doi: 10.1038/nature06195. Nature. 2007. PMID: 17960240
LipidFinder 2.0: advanced informatics pipeline for lipidomics discovery applications.
Alvarez-Jarreta J, Rodrigues PRS, Fahy E, O'Connor A, Price A, Gaud C, Andrews S, Benton P, Siuzdak G, Hawksworth JI, Valdivia-Garcia M, Allen SM, O'Donnell VB. Alvarez-Jarreta J, et al. Among authors: siuzdak g. Bioinformatics. 2021 Jun 16;37(10):1478-1479. doi: 10.1093/bioinformatics/btaa856. Bioinformatics. 2021. PMID: 33027502 Free PMC article.
Cognitive analysis of metabolomics data for systems biology.
Majumder EL, Billings EM, Benton HP, Martin RL, Palermo A, Guijas C, Rinschen MM, Domingo-Almenara X, Montenegro-Burke JR, Tagtow BA, Plumb RS, Siuzdak G. Majumder EL, et al. Among authors: siuzdak g. Nat Protoc. 2021 Mar;16(3):1376-1418. doi: 10.1038/s41596-020-00455-4. Epub 2021 Jan 22. Nat Protoc. 2021. PMID: 33483720 Free PMC article.
METLIN-CCS: an ion mobility spectrometry collision cross section database.
Baker ES, Hoang C, Uritboonthai W, Heyman HM, Pratt B, MacCoss M, MacLean B, Plumb R, Aisporna A, Siuzdak G. Baker ES, et al. Among authors: siuzdak g. Nat Methods. 2023 Dec;20(12):1836-1837. doi: 10.1038/s41592-023-02078-5. Nat Methods. 2023. PMID: 37932399 Free PMC article. No abstract available.
An assembly landscape for the 30S ribosomal subunit.
Talkington MW, Siuzdak G, Williamson JR. Talkington MW, et al. Among authors: siuzdak g. Nature. 2005 Dec 1;438(7068):628-32. doi: 10.1038/nature04261. Nature. 2005. PMID: 16319883 Free PMC article.
214 results