Singha M - Search Results

1

Unlocking the Potential of Kinase Targets in Cancer: Insights from CancerOmicsNet, an AI-Driven Approach to Drug Response Prediction in Cancer.

Singha M, Pu L, Srivastava G, Ni X, Stanfield BA, Uche IK, Rider PJF, Kousoulas KG, Ramanujam J, Brylinski M. Singha M, et al. Cancers (Basel). 2023 Aug 10;15(16):4050. doi: 10.3390/cancers15164050. Cancers (Basel). 2023. PMID: 37627077 Free PMC article.

2

CancerOmicsNet: a multi-omics network-based approach to anti-cancer drug profiling.

Pu L, Singha M, Ramanujam J, Brylinski M. Pu L, et al. Among authors: singha m. Oncotarget. 2022 May 19;13:695-706. doi: 10.18632/oncotarget.28234. eCollection 2022. Oncotarget. 2022. PMID: 35601606 Free PMC article.

3

GraphDTI: A robust deep learning predictor of drug-target interactions from multiple heterogeneous data.

Liu G, Singha M, Pu L, Neupane P, Feinstein J, Wu HC, Ramanujam J, Brylinski M. Liu G, et al. Among authors: singha m. J Cheminform. 2021 Aug 11;13(1):58. doi: 10.1186/s13321-021-00540-0. J Cheminform. 2021. PMID: 34380569 Free PMC article.

4

Pocket2Drug: An Encoder-Decoder Deep Neural Network for the Target-Based Drug Design.

Shi W, Singha M, Srivastava G, Pu L, Ramanujam J, Brylinski M. Shi W, et al. Among authors: singha m. Front Pharmacol. 2022 Mar 11;13:837715. doi: 10.3389/fphar.2022.837715. eCollection 2022. Front Pharmacol. 2022. PMID: 35359869 Free PMC article.

5

An integrated network representation of multiple cancer-specific data for graph-based machine learning.

Pu L, Singha M, Wu HC, Busch C, Ramanujam J, Brylinski M. Pu L, et al. Among authors: singha m. NPJ Syst Biol Appl. 2022 Apr 29;8(1):14. doi: 10.1038/s41540-022-00226-9. NPJ Syst Biol Appl. 2022. PMID: 35487924 Free PMC article.

6

GraphSite: Ligand Binding Site Classification with Deep Graph Learning.

Shi W, Singha M, Pu L, Srivastava G, Ramanujam J, Brylinski M. Shi W, et al. Among authors: singha m. Biomolecules. 2022 Jul 29;12(8):1053. doi: 10.3390/biom12081053. Biomolecules. 2022. PMID: 36008947 Free PMC article.

7

Artificial intelligence to guide precision anticancer therapy with multitargeted kinase inhibitors.

Singha M, Pu L, Stanfield BA, Uche IK, Rider PJF, Kousoulas KG, Ramanujam J, Brylinski M. Singha M, et al. BMC Cancer. 2022 Nov 24;22(1):1211. doi: 10.1186/s12885-022-10293-0. BMC Cancer. 2022. PMID: 36434556 Free PMC article.

8

BionoiNet: ligand-binding site classification with off-the-shelf deep neural network.

Shi W, Lemoine JM, Shawky AA, Singha M, Pu L, Yang S, Ramanujam J, Brylinski M. Shi W, et al. Among authors: singha m. Bioinformatics. 2020 May 1;36(10):3077-3083. doi: 10.1093/bioinformatics/btaa094. Bioinformatics. 2020. PMID: 32053156 Free PMC article.

9

Large-scale computational drug repositioning to find treatments for rare diseases.

Govindaraj RG, Naderi M, Singha M, Lemoine J, Brylinski M. Govindaraj RG, et al. Among authors: singha m. NPJ Syst Biol Appl. 2018 Mar 13;4:13. doi: 10.1038/s41540-018-0050-7. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 29560273 Free PMC article.

10

Aberrant splicing in Huntington's disease via disrupted TDP-43 activity accompanied by altered m6A RNA modification.

Nguyen TB, Miramontes R, Chillon-Marinas C, Maimon R, Vazquez-Sanchez S, Lau AL, McClure NR, England WE, Singha M, Stocksdale JT, Jang KH, Jung S, McKnight JI, Ho LN, Faull RLM, Steffan JS, Reidling JC, Jang C, Lee G, Cleveland DW, Lagier-Tourenne C, Spitale RC, Thompson LM. Nguyen TB, et al. Among authors: singha m. bioRxiv [Preprint]. 2023 Nov 2:2023.10.31.565004. doi: 10.1101/2023.10.31.565004. bioRxiv. 2023. PMID: 37961595 Free PMC article. Preprint.

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