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Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, Yang G, Liu M, Shi H, Lu X, Chang S, Roy RS, Quadir F, Liu J, Cheng J, Antoniak A, Czaplewski C, Giełdoń A, Kogut M, Lipska AG, Liwo A, Lubecka EA, Maszota-Zieleniak M, Sieradzan AK, Ślusarz R, Wesołowski PA, Zięba K, Del Carpio Muñoz CA, Ichiishi E, Harmalkar A, Gray JJ, Bonvin AMJJ, Ambrosetti F, Vargas Honorato R, Jandova Z, Jiménez-García B, Koukos PI, Van Keulen S, Van Noort CW, Réau M, Roel-Touris J, Kotelnikov S, Padhorny D, Porter KA, Alekseenko A, Ignatov M, Desta I, Ashizawa R, Sun Z, Ghani U, Hashemi N, Vajda S, Kozakov D, Rosell M, Rodríguez-Lumbreras LA, Fernandez-Recio J, Karczynska A, Grudinin S, Yan Y, Li H, Lin P, Huang SY, Christoffer C, Terashi G, Verburgt J, Sarkar D, Aderinwale T, Wang X, Kihara D, Nakamura T, Hanazono Y, Gowthaman R, Guest JD, Yin R, Taherzadeh G, Pierce BG, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Sun Y, Zhu S, Shen Y, Park T, Woo H, Yang J, Kwon S, Won J, Seok C, Kiyota Y, Kobayashi S, Harada Y, Takeda-Shitaka M, Kundrotas PJ, Singh A, Vakser IA, Dapkūnas J, Olechnovič K, Venclovas Č, Duan R, Qiu L, Xu X, Zhang S, Zou X,… See abstract for full author list ➔ Lensink MF, et al. Among authors: singh a. Proteins. 2021 Dec;89(12):1800-1823. doi: 10.1002/prot.26222. Epub 2021 Sep 13. Proteins. 2021. PMID: 34453465 Free PMC article.
Application of docking methodologies to modeled proteins.
Singh A, Dauzhenka T, Kundrotas PJ, Sternberg MJE, Vakser IA. Singh A, et al. Proteins. 2020 Sep;88(9):1180-1188. doi: 10.1002/prot.25889. Epub 2020 Mar 20. Proteins. 2020. PMID: 32170770 Free PMC article.
Dockground resource for protein recognition studies.
Collins KW, Copeland MM, Kotthoff I, Singh A, Kundrotas PJ, Vakser IA. Collins KW, et al. Among authors: singh a. Protein Sci. 2022 Dec;31(12):e4481. doi: 10.1002/pro.4481. Protein Sci. 2022. PMID: 36281025 Free PMC article.
[No title available]
[No authors listed] [No authors listed] PMID: 36784471
GRAMM Web Server for Protein Docking.
Singh A, Copeland MM, Kundrotas PJ, Vakser IA. Singh A, et al. Methods Mol Biol. 2024;2714:101-112. doi: 10.1007/978-1-0716-3441-7_5. Methods Mol Biol. 2024. PMID: 37676594
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