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First Steps in the Analysis of Prokaryotic Pan-Genomes.
Costa SS, Guimarães LC, Silva A, Soares SC, Baraúna RA. Costa SS, et al. Among authors: silva a. Bioinform Biol Insights. 2020 Aug 7;14:1177932220938064. doi: 10.1177/1177932220938064. eCollection 2020. Bioinform Biol Insights. 2020. PMID: 32843837 Free PMC article. Review.
Inside the Pan-genome - Methods and Software Overview.
Guimarães LC, Florczak-Wyspianska J, de Jesus LB, Viana MV, Silva A, Ramos RT, Soares Sde C, Soares Sde C. Guimarães LC, et al. Among authors: silva a. Curr Genomics. 2015 Aug;16(4):245-52. doi: 10.2174/1389202916666150423002311. Curr Genomics. 2015. PMID: 27006628 Free PMC article.
GapBlaster-A Graphical Gap Filler for Prokaryote Genomes.
de Sá PH, Miranda F, Veras A, de Melo DM, Soares S, Pinheiro K, Guimarães L, Azevedo V, Silva A, Ramos RT. de Sá PH, et al. Among authors: silva a. PLoS One. 2016 May 12;11(5):e0155327. doi: 10.1371/journal.pone.0155327. eCollection 2016. PLoS One. 2016. PMID: 27171416 Free PMC article.
PanWeb: A web interface for pan-genomic analysis.
Pantoja Y, Pinheiro K, Veras A, Araújo F, Lopes de Sousa A, Guimarães LC, Silva A, Ramos RTJ. Pantoja Y, et al. Among authors: silva a. PLoS One. 2017 May 24;12(5):e0178154. doi: 10.1371/journal.pone.0178154. eCollection 2017. PLoS One. 2017. PMID: 28542514 Free PMC article.
Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica.
Carneiro AR, Ramos RT, Dall'Agnol H, Pinto AC, de Castro Soares S, Santos AR, Guimarães LC, Almeida SS, Baraúna RA, das Graças DA, Franco LC, Ali A, Hassan SS, Nunes CI, Barbosa MS, Fiaux KK, Aburjaile FF, Barbosa EG, Bakhtiar SM, Vilela D, Nóbrega F, dos Santos AL, Carepo MS, Azevedo V, Schneider MP, Pellizari VH, Silva A. Carneiro AR, et al. Among authors: silva a. J Bacteriol. 2012 Dec;194(23):6689-90. doi: 10.1128/JB.01791-12. J Bacteriol. 2012. PMID: 23144424 Free PMC article.
The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome.
Santos AR, Carneiro A, Gala-García A, Pinto A, Barh D, Barbosa E, Aburjaile F, Dorella F, Rocha F, Guimarães L, Zurita-Turk M, Ramos R, Almeida S, Soares S, Pereira U, Abreu VC, Silva A, Miyoshi A, Azevedo V. Santos AR, et al. Among authors: silva a. BMC Genomics. 2012;13 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2164-13-S5-S6. Epub 2012 Oct 19. BMC Genomics. 2012. PMID: 23095951 Free PMC article.
Genomic analysis of four strains of Corynebacterium pseudotuberculosis bv. Equi isolated from horses showing distinct signs of infection.
Baraúna RA, Ramos RTJ, Veras AAO, de Sá PHCG, Guimarães LC, das Graças DA, Carneiro AR, Edman JM, Spier SJ, Azevedo V, Silva A. Baraúna RA, et al. Among authors: silva a. Stand Genomic Sci. 2017 Jan 31;12:16. doi: 10.1186/s40793-017-0234-6. eCollection 2017. Stand Genomic Sci. 2017. PMID: 28163825 Free PMC article.
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