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A novel in silico reverse-transcriptomics-based identification and blood-based validation of a panel of sub-type specific biomarkers in lung cancer.
Barh D, Jain N, Tiwari S, Field JK, Padin-Iruegas E, Ruibal A, López R, Herranz M, Bhattacharya A, Juneja L, Viero C, Silva A, Miyoshi A, Kumar A, Blum K, Azevedo V, Ghosh P, Liloglou T. Barh D, et al. Among authors: silva a. BMC Genomics. 2013;14 Suppl 6(Suppl 6):S5. doi: 10.1186/1471-2164-14-S6-S5. Epub 2013 Oct 25. BMC Genomics. 2013. PMID: 24564251 Free PMC article.
miRegulome: a knowledge-base of miRNA regulomics and analysis.
Barh D, Kamapantula B, Jain N, Nalluri J, Bhattacharya A, Juneja L, Barve N, Tiwari S, Miyoshi A, Azevedo V, Blum K, Kumar A, Silva A, Ghosh P. Barh D, et al. Among authors: silva a. Sci Rep. 2015 Aug 5;5:12832. doi: 10.1038/srep12832. Sci Rep. 2015. PMID: 26243198 Free PMC article.
PANNOTATOR: an automated tool for annotation of pan-genomes.
Santos AR, Barbosa E, Fiaux K, Zurita-Turk M, Chaitankar V, Kamapantula B, Abdelzaher A, Ghosh P, Tiwari S, Barve N, Jain N, Barh D, Silva A, Miyoshi A, Azevedo V. Santos AR, et al. Among authors: silva a. Genet Mol Res. 2013 Aug 16;12(3):2982-9. doi: 10.4238/2013.August.16.2. Genet Mol Res. 2013. PMID: 24065654 Free article.
Proteome scale comparative modeling for conserved drug and vaccine targets identification in Corynebacterium pseudotuberculosis.
Hassan SS, Tiwari S, Guimarães LC, Jamal SB, Folador E, Sharma NB, de Castro Soares S, Almeida S, Ali A, Islam A, Póvoa FD, de Abreu VA, Jain N, Bhattacharya A, Juneja L, Miyoshi A, Silva A, Barh D, Turjanski A, Azevedo V, Ferreira RS. Hassan SS, et al. Among authors: silva a. BMC Genomics. 2014;15 Suppl 7(Suppl 7):S3. doi: 10.1186/1471-2164-15-S7-S3. Epub 2014 Oct 27. BMC Genomics. 2014. PMID: 25573232 Free PMC article.
Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002.
Mariano DC, Sousa Tde J, Pereira FL, Aburjaile F, Barh D, Rocha F, Pinto AC, Hassan SS, Saraiva TD, Dorella FA, de Carvalho AF, Leal CA, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. Mariano DC, et al. Among authors: silva a. BMC Genomics. 2016 Apr 30;17:315. doi: 10.1186/s12864-016-2673-7. BMC Genomics. 2016. PMID: 27129708 Free PMC article.
Corynebacterium pseudotuberculosis may be under anagenesis and biovar Equi forms biovar Ovis: a phylogenic inference from sequence and structural analysis.
Oliveira A, Teixeira P, Azevedo M, Jamal SB, Tiwari S, Almeida S, Silva A, Barh D, Dorneles EM, Haas DJ, Heinemann MB, Ghosh P, Lage AP, Figueiredo H, Ferreira RS, Azevedo V. Oliveira A, et al. Among authors: silva a. BMC Microbiol. 2016 Jun 2;16:100. doi: 10.1186/s12866-016-0717-4. BMC Microbiol. 2016. PMID: 27251711 Free PMC article.
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