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Transfer Learning Reveals Cancer-Associated Fibroblasts Are Associated with Epithelial-Mesenchymal Transition and Inflammation in Cancer Cells in Pancreatic Ductal Adenocarcinoma.
Cancer Res. 2024 May 2;84(9):1517-1533. doi: 10.1158/0008-5472.CAN-23-1660.
Cancer Res. 2024.
PMID: 38587552
Systems immunology spanning tumors, lymph nodes, and periphery.
Sidiropoulos DN, Ho WJ, Jaffee EM, Kagohara LT, Fertig EJ.
Sidiropoulos DN, et al.
Cell Rep Methods. 2023 Dec 18;3(12):100670. doi: 10.1016/j.crmeth.2023.100670. Epub 2023 Dec 11.
Cell Rep Methods. 2023.
PMID: 38086385
Free PMC article.
Review.
Item in Clipboard
Immune landscape of tertiary lymphoid structures in hepatocellular carcinoma (HCC) treated with neoadjuvant immune checkpoint blockade.
Shu DH, Ho WJ, Kagohara LT, Girgis A, Shin SM, Danilova L, Lee JW, Sidiropoulos DN, Mitchell S, Munjal K, Howe K, Bendinelli KJ, Qi H, Mo G, Montagne J, Leatherman JM, Lopez-Vidal TY, Zhu Q, Huff AL, Yuan X, Hernandez A, Coyne EM, Zaidi N, Zabransky DJ, Engle LL, Ogurtsova A, Baretti M, Laheru D, Durham JN, Wang H, Anders R, Jaffee EM, Fertig EJ, Yarchoan M.
Shu DH, et al. Among authors: sidiropoulos dn.
bioRxiv [Preprint]. 2023 Oct 26:2023.10.16.562104. doi: 10.1101/2023.10.16.562104.
bioRxiv. 2023.
PMID: 37904980
Free PMC article.
Preprint.
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Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces.
Deshpande A, Loth M, Sidiropoulos DN, Zhang S, Yuan L, Bell ATF, Zhu Q, Ho WJ, Santa-Maria C, Gilkes DM, Williams SR, Uytingco CR, Chew J, Hartnett A, Bent ZW, Favorov AV, Popel AS, Yarchoan M, Kiemen A, Wu PH, Fujikura K, Wirtz D, Wood LD, Zheng L, Jaffee EM, Anders RA, Danilova L, Stein-O'Brien G, Kagohara LT, Fertig EJ.
Deshpande A, et al. Among authors: sidiropoulos dn.
Cell Syst. 2023 Aug 16;14(8):722. doi: 10.1016/j.cels.2023.07.006.
Cell Syst. 2023.
PMID: 37591207
Free PMC article.
No abstract available.
Item in Clipboard
Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces.
Deshpande A, Loth M, Sidiropoulos DN, Zhang S, Yuan L, Bell ATF, Zhu Q, Ho WJ, Santa-Maria C, Gilkes DM, Williams SR, Uytingco CR, Chew J, Hartnett A, Bent ZW, Favorov AV, Popel AS, Yarchoan M, Kiemen A, Wu PH, Fujikura K, Wirtz D, Wood LD, Zheng L, Jaffee EM, Anders RA, Danilova L, Stein-O'Brien G, Kagohara LT, Fertig EJ.
Deshpande A, et al. Among authors: sidiropoulos dn.
Cell Syst. 2023 Apr 19;14(4):285-301.e4. doi: 10.1016/j.cels.2023.03.004.
Cell Syst. 2023.
PMID: 37080163
Free PMC article.
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Integrated T cell cytometry metrics for immune-monitoring applications in immunotherapy clinical trials.
Sidiropoulos DN, Stein-O'Brien GL, Danilova L, Gross NE, Charmsaz S, Xavier S, Leatherman J, Wang H, Yarchoan M, Jaffee EM, Fertig EJ, Ho WJ.
Sidiropoulos DN, et al.
JCI Insight. 2022 Oct 10;7(19):e160398. doi: 10.1172/jci.insight.160398.
JCI Insight. 2022.
PMID: 36214223
Free PMC article.
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Entinostat Decreases Immune Suppression to Promote Antitumor Responses in a HER2+ Breast Tumor Microenvironment.
Sidiropoulos DN, Rafie CI, Jang JK, Castanon S, Baugh AG, Gonzalez E, Christmas BJ, Narumi VH, Davis-Marcisak EF, Sharma G, Bigelow E, Vaghasia A, Gupta A, Skaist A, Considine M, Wheelan SJ, Ganesan SK, Yu M, Yegnasubramanian S, Stearns V, Connolly RM, Gaykalova DA, Kagohara LT, Jaffee EM, Fertig EJ, Roussos Torres ET.
Sidiropoulos DN, et al.
Cancer Immunol Res. 2022 May 3;10(5):656-669. doi: 10.1158/2326-6066.CIR-21-0170.
Cancer Immunol Res. 2022.
PMID: 35201318
Free PMC article.
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Wild primate microbiomes prevent weight gain in germ-free mice.
Sidiropoulos DN, Al-Ghalith GA, Shields-Cutler RR, Ward TL, Johnson AJ, Vangay P, Knights D, Kashyap PC, Xian Y, Ramer-Tait AE, Clayton JB.
Sidiropoulos DN, et al.
Anim Microbiome. 2020 May 7;2(1):16. doi: 10.1186/s42523-020-00033-9.
Anim Microbiome. 2020.
PMID: 33499991
Free PMC article.
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