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The genome of cowpea (Vigna unguiculata [L.] Walp.).
Lonardi S, Muñoz-Amatriaín M, Liang Q, Shu S, Wanamaker SI, Lo S, Tanskanen J, Schulman AH, Zhu T, Luo MC, Alhakami H, Ounit R, Hasan AM, Verdier J, Roberts PA, Santos JRP, Ndeve A, Doležel J, Vrána J, Hokin SA, Farmer AD, Cannon SB, Close TJ. Lonardi S, et al. Among authors: shu s. Plant J. 2019 Jun;98(5):767-782. doi: 10.1111/tpj.14349. Plant J. 2019. PMID: 31017340 Free PMC article.
Genome sequence of the palaeopolyploid soybean.
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA. Schmutz J, et al. Among authors: shu s. Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Nature. 2010. PMID: 20075913
A reference genome for common bean and genome-wide analysis of dual domestications.
Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, Barry K, Blair M, Brick MA, Chovatia M, Gepts P, Goodstein DM, Gonzales M, Hellsten U, Hyten DL, Jia G, Kelly JD, Kudrna D, Lee R, Richard MM, Miklas PN, Osorno JM, Rodrigues J, Thareau V, Urrea CA, Wang M, Yu Y, Zhang M, Wing RA, Cregan PB, Rokhsar DS, Jackson SA. Schmutz J, et al. Among authors: shu s. Nat Genet. 2014 Jul;46(7):707-13. doi: 10.1038/ng.3008. Epub 2014 Jun 8. Nat Genet. 2014. PMID: 24908249 Free PMC article.
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.
McCormick RF, Truong SK, Sreedasyam A, Jenkins J, Shu S, Sims D, Kennedy M, Amirebrahimi M, Weers BD, McKinley B, Mattison A, Morishige DT, Grimwood J, Schmutz J, Mullet JE. McCormick RF, et al. Among authors: shu s. Plant J. 2018 Jan;93(2):338-354. doi: 10.1111/tpj.13781. Epub 2017 Dec 28. Plant J. 2018. PMID: 29161754 Free article.
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.
Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA. Lang D, et al. Among authors: shu s. Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801. Plant J. 2018. PMID: 29237241 Free article.
Construction and comparison of three reference-quality genome assemblies for soybean.
Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CY, Chan TF, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, Patil G, Varshney RK, Hu H, Batley J, Yuan Y, Song Q, Stupar RM, Goodstein DM, Stacey G, Lam HM, Jackson SA, Schmutz J, Grimwood J, Edwards D, Nguyen HT. Valliyodan B, et al. Among authors: shu s. Plant J. 2019 Dec;100(5):1066-1082. doi: 10.1111/tpj.14500. Epub 2019 Oct 28. Plant J. 2019. PMID: 31433882 Free article.
A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.).
Liang Q, Muñoz-Amatriaín M, Shu S, Lo S, Wu X, Carlson JW, Davidson P, Goodstein DM, Phillips J, Janis NM, Lee EJ, Liang C, Morrell PL, Farmer AD, Xu P, Close TJ, Lonardi S. Liang Q, et al. Among authors: shu s. Plant Genome. 2024 Mar;17(1):e20319. doi: 10.1002/tpg2.20319. Epub 2023 Mar 22. Plant Genome. 2024. PMID: 36946261 Free article.
The genome of the Western clawed frog Xenopus tropicalis.
Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS. Hellsten U, et al. Among authors: shu s. Science. 2010 Apr 30;328(5978):633-6. doi: 10.1126/science.1183670. Science. 2010. PMID: 20431018 Free PMC article.
Phytozome: a comparative platform for green plant genomics.
Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, Rokhsar DS. Goodstein DM, et al. Among authors: shu s. Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86. doi: 10.1093/nar/gkr944. Epub 2011 Nov 22. Nucleic Acids Res. 2012. PMID: 22110026 Free PMC article.
The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history.
Filiault DL, Ballerini ES, Mandáková T, Aköz G, Derieg NJ, Schmutz J, Jenkins J, Grimwood J, Shu S, Hayes RD, Hellsten U, Barry K, Yan J, Mihaltcheva S, Karafiátová M, Nizhynska V, Kramer EM, Lysak MA, Hodges SA, Nordborg M. Filiault DL, et al. Among authors: shu s. Elife. 2018 Oct 16;7:e36426. doi: 10.7554/eLife.36426. Elife. 2018. PMID: 30325307 Free PMC article.
1,382 results