Shoji M - Search Results

1

Specific zinc binding to heliorhodopsin.

Hashimoto M, Miyagawa K, Singh M, Katayama K, Shoji M, Furutani Y, Shigeta Y, Kandori H. Hashimoto M, et al. Among authors: shoji m. Phys Chem Chem Phys. 2023 Jan 27;25(4):3535-3543. doi: 10.1039/d2cp04718g. Phys Chem Chem Phys. 2023. PMID: 36637167

2

Catalytic Mechanism of Nitrile Hydratase Subsequent to Cyclic Intermediate Formation: A QM/MM Study.

Kayanuma M, Shoji M, Yohda M, Odaka M, Shigeta Y. Kayanuma M, et al. Among authors: shoji m. J Phys Chem B. 2016 Apr 7;120(13):3259-66. doi: 10.1021/acs.jpcb.5b11363. Epub 2016 Mar 23. J Phys Chem B. 2016. PMID: 27007978

3

Molecular mechanisms of substrate specificities of uridinecytidine kinase.

Tanaka W, Shoji M, Tomoike F, Ujiie Y, Hanaoka K, Harada R, Kayanuma M, Kamiya K, Ishida T, Masui R, Kuramitsu S, Shigeta Y. Tanaka W, et al. Among authors: shoji m. Biophys Physicobiol. 2016 Jun 8;13:77-84. doi: 10.2142/biophysico.13.0_77. eCollection 2016. Biophys Physicobiol. 2016. PMID: 27924260 Free PMC article.

4

Large-scale QM/MM calculations of the CaMn₄O₅ cluster in the S₃ state of the oxygen evolving complex of photosystem II. Comparison between water-inserted and no water-inserted structures.

Shoji M, Isobe H, Nakajima T, Shigeta Y, Suga M, Akita F, Shen JR, Yamaguchi K. Shoji M, et al. Faraday Discuss. 2017 Jun 2;198:83-106. doi: 10.1039/c6fd00230g. Faraday Discuss. 2017. PMID: 28276543

5

Molecular Mechanism of the Reaction Specificity in Threonine Synthase: Importance of the Substrate Conformations.

Ujiie Y, Tanaka W, Hanaoka K, Harada R, Kayanuma M, Shoji M, Murakawa T, Ishida T, Shigeta Y, Hayashi H. Ujiie Y, et al. Among authors: shoji m. J Phys Chem B. 2017 Jun 8;121(22):5536-5543. doi: 10.1021/acs.jpcb.7b02932. Epub 2017 May 24. J Phys Chem B. 2017. PMID: 28489381

6

Molecular association model of PPARα and its new specific and efficient ligand, pemafibrate: Structural basis for SPPARMα.

Yamamoto Y, Takei K, Arulmozhiraja S, Sladek V, Matsuo N, Han SI, Matsuzaka T, Sekiya M, Tokiwa T, Shoji M, Shigeta Y, Nakagawa Y, Tokiwa H, Shimano H. Yamamoto Y, et al. Among authors: shoji m. Biochem Biophys Res Commun. 2018 May 5;499(2):239-245. doi: 10.1016/j.bbrc.2018.03.135. Epub 2018 Mar 22. Biochem Biophys Res Commun. 2018. PMID: 29567478

7

Concerted Mechanism of Water Insertion and O₂ Release during the S₄ to S₀ Transition of the Oxygen-Evolving Complex in Photosystem II.

Shoji M, Isobe H, Shigeta Y, Nakajima T, Yamaguchi K. Shoji M, et al. J Phys Chem B. 2018 Jun 28;122(25):6491-6502. doi: 10.1021/acs.jpcb.8b03465. Epub 2018 Jun 15. J Phys Chem B. 2018. PMID: 29852735

8

Redox Potential-Dependent Formation of an Unusual His-Trp Bond in Bilirubin Oxidase.

Akter M, Tokiwa T, Shoji M, Nishikawa K, Shigeta Y, Sakurai T, Higuchi Y, Kataoka K, Shibata N. Akter M, et al. Among authors: shoji m. Chemistry. 2018 Dec 5;24(68):18052-18058. doi: 10.1002/chem.201803798. Epub 2018 Nov 15. Chemistry. 2018. PMID: 30156345

9

UNO DMRG CAS CI calculations of binuclear manganese complex Mn(IV)₂ O₂ (NHCHCO₂ )₄ : Scope and applicability of Heisenberg model.

Kawakami T, Miyagawa K, Sharma S, Saito T, Shoji M, Yamada S, Yamanaka S, Okumura M, Nakajima T, Yamaguchi K. Kawakami T, et al. Among authors: shoji m. J Comput Chem. 2019 Jan 15;40(2):333-341. doi: 10.1002/jcc.25602. Epub 2018 Oct 20. J Comput Chem. 2019. PMID: 30341945

10

Structural Changes of the Trinuclear Copper Center in Bilirubin Oxidase upon Reduction.

Tokiwa T, Shoji M, Sladek V, Shibata N, Higuchi Y, Kataoka K, Sakurai T, Shigeta Y, Misaizu F. Tokiwa T, et al. Among authors: shoji m. Molecules. 2018 Dec 26;24(1):76. doi: 10.3390/molecules24010076. Molecules. 2018. PMID: 30587809 Free PMC article.

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