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Artificial intelligence in histopathology: enhancing cancer research and clinical oncology.
Nat Cancer. 2022 Sep;3(9):1026-1038. doi: 10.1038/s43018-022-00436-4. Epub 2022 Sep 22.
Nat Cancer. 2022.
PMID: 36138135
Review.
Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis.
Fu Y, Jung AW, Torne RV, Gonzalez S, Vöhringer H, Shmatko A, Yates LR, Jimenez-Linan M, Moore L, Gerstung M.
Fu Y, et al. Among authors: shmatko a.
Nat Cancer. 2020 Aug;1(8):800-810. doi: 10.1038/s43018-020-0085-8. Epub 2020 Jul 27.
Nat Cancer. 2020.
PMID: 35122049
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Cell2location maps fine-grained cell types in spatial transcriptomics.
Kleshchevnikov V, Shmatko A, Dann E, Aivazidis A, King HW, Li T, Elmentaite R, Lomakin A, Kedlian V, Gayoso A, Jain MS, Park JS, Ramona L, Tuck E, Arutyunyan A, Vento-Tormo R, Gerstung M, James L, Stegle O, Bayraktar OA.
Kleshchevnikov V, et al. Among authors: shmatko a.
Nat Biotechnol. 2022 May;40(5):661-671. doi: 10.1038/s41587-021-01139-4. Epub 2022 Jan 13.
Nat Biotechnol. 2022.
PMID: 35027729
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Teacher-student collaborated multiple instance learning for pan-cancer PDL1 expression prediction from histopathology slides.
Jin D, Liang S, Shmatko A, Arnold A, Horst D, Grünewald TGP, Gerstung M, Bai X.
Jin D, et al. Among authors: shmatko a.
Nat Commun. 2024 Apr 9;15(1):3063. doi: 10.1038/s41467-024-46764-0.
Nat Commun. 2024.
PMID: 38594278
Free PMC article.
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Spatial genomics maps the structure, nature and evolution of cancer clones.
Lomakin A, Svedlund J, Strell C, Gataric M, Shmatko A, Rukhovich G, Park JS, Ju YS, Dentro S, Kleshchevnikov V, Vaskivskyi V, Li T, Bayraktar OA, Pinder S, Richardson AL, Santagata S, Campbell PJ, Russnes H, Gerstung M, Nilsson M, Yates LR.
Lomakin A, et al. Among authors: shmatko a.
Nature. 2022 Nov;611(7936):594-602. doi: 10.1038/s41586-022-05425-2. Epub 2022 Nov 9.
Nature. 2022.
PMID: 36352222
Free PMC article.
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