Shkedy Z - Search Results

1

Identification of in vitro and in vivo disconnects using transcriptomic data.

Otava M, Shkedy Z, Talloen W, Verheyen GR, Kasim A. Otava M, et al. Among authors: shkedy z. BMC Genomics. 2015 Aug 18;16(1):615. doi: 10.1186/s12864-015-1726-7. BMC Genomics. 2015. PMID: 26282683 Free PMC article.

2

Weighted similarity-based clustering of chemical structures and bioactivity data in early drug discovery.

Perualila-Tan NJ, Shkedy Z, Talloen W, Göhlmann HW; Quantitative Structure Transcription Assay Relationships (QSTAR) Consortium; Moerbeke MV, Kasim A. Perualila-Tan NJ, et al. Among authors: shkedy z. J Bioinform Comput Biol. 2016 Aug;14(4):1650018. doi: 10.1142/S0219720016500189. Epub 2016 Apr 26. J Bioinform Comput Biol. 2016. PMID: 27312313

3

Identification of the minimum effective dose for normally distributed data using a Bayesian variable selection approach.

Otava M, Shkedy Z, Hothorn LA, Talloen W, Gerhard D, Kasim A. Otava M, et al. Among authors: shkedy z. J Biopharm Stat. 2017;27(6):1073-1088. doi: 10.1080/10543406.2017.1295247. Epub 2017 Mar 22. J Biopharm Stat. 2017. PMID: 28328286

4

A random effects model for the identification of differential splicing (REIDS) using exon and HTA arrays.

Van Moerbeke M, Kasim A, Talloen W, Reumers J, Göhlmann HWH, Shkedy Z. Van Moerbeke M, et al. Among authors: shkedy z. BMC Bioinformatics. 2017 May 25;18(1):273. doi: 10.1186/s12859-017-1687-8. BMC Bioinformatics. 2017. PMID: 28545391 Free PMC article.

5

Gene filtering in the analysis of Illumina microarray experiments.

Forcheh AC, Verbeke G, Kasim A, Lin D, Shkedy Z, Talloen W, Göhlmann HW, Clement L. Forcheh AC, et al. Among authors: shkedy z. Stat Appl Genet Mol Biol. 2012 Jan 6;11(2):/j/sagmb.2012.11.issue-2/1544-6115.1710/1544-6115.1710.xml. doi: 10.2202/1544-6115.1710. Stat Appl Genet Mol Biol. 2012. PMID: 22499694

6

Quality control of Platinum Spike dataset by probe-level mixed models.

Khamiakova T, Shkedy Z, Amaratunga D, Talloen W, Göhlmann H, Bijnens L, Kasim A. Khamiakova T, et al. Among authors: shkedy z. Math Biosci. 2014 Feb;248:1-10. doi: 10.1016/j.mbs.2013.11.004. Epub 2013 Dec 1. Math Biosci. 2014. PMID: 24300569

7

Using transcriptomics to guide lead optimization in drug discovery projects: Lessons learned from the QSTAR project.

Verbist B, Klambauer G, Vervoort L, Talloen W; QSTAR Consortium; Shkedy Z, Thas O, Bender A, Göhlmann HW, Hochreiter S. Verbist B, et al. Among authors: shkedy z. Drug Discov Today. 2015 May;20(5):505-13. doi: 10.1016/j.drudis.2014.12.014. Epub 2015 Jan 10. Drug Discov Today. 2015. PMID: 25582842 Free article.

8

The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model.

Van Moerbeke M, Kasim A, Shkedy Z. Van Moerbeke M, et al. Among authors: shkedy z. Sci Rep. 2018 May 29;8(1):8331. doi: 10.1038/s41598-018-26695-9. Sci Rep. 2018. PMID: 29844567 Free PMC article.

9

The use of semiparametric mixed models to analyze PamChip(R) peptide array data: an application to an oncology experiment.

Thilakarathne PJ, Clement L, Lin D, Shkedy Z, Kasim A, Talloen W, Versele M, Verbeke G. Thilakarathne PJ, et al. Among authors: shkedy z. Bioinformatics. 2011 Oct 15;27(20):2859-65. doi: 10.1093/bioinformatics/btr475. Epub 2011 Aug 16. Bioinformatics. 2011. PMID: 21846736

10

Connecting gene expression data from connectivity map and in silico target predictions for small molecule mechanism-of-action analysis.

Ravindranath AC, Perualila-Tan N, Kasim A, Drakakis G, Liggi S, Brewerton SC, Mason D, Bodkin MJ, Evans DA, Bhagwat A, Talloen W, Göhlmann HW, Shkedy Z, Bender A; QSTAR Consortium. Ravindranath AC, et al. Among authors: shkedy z. Mol Biosyst. 2015 Jan;11(1):86-96. doi: 10.1039/c4mb00328d. Epub 2014 Sep 25. Mol Biosyst. 2015. PMID: 25254964

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