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Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one.
Magat Juan EC, Shimizu S, Ma X, Kurose T, Haraguchi T, Zhang F, Tsunoda M, Ohkubo A, Sekine M, Shibata T, Millington CL, Williams DM, Takénaka A. Magat Juan EC, et al. Among authors: shimizu s. Nucleic Acids Res. 2010 Oct;38(19):6737-45. doi: 10.1093/nar/gkq519. Epub 2010 Jun 16. Nucleic Acids Res. 2010. PMID: 20554855 Free PMC article.
Crystal structures of DNA duplexes stabilized by bicyclic-C residues.
Haraguchi T, Shimizu S, Ma X, Kurose T, Juan EC, Ohkubo A, Sekine M, Shibata T, Millington CL, Williams DM, Takénaka A. Haraguchi T, et al. Among authors: shimizu s. Nucleic Acids Symp Ser (Oxf). 2008;(52):127-8. doi: 10.1093/nass/nrn065. Nucleic Acids Symp Ser (Oxf). 2008. PMID: 18776286
Structures of Arthrobacter globiformis urate oxidase-ligand complexes.
Juan EC, Hoque MM, Shimizu S, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Tsunoda M, Amano H, Sekiguchi T, Takénaka A. Juan EC, et al. Among authors: shimizu s. Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):815-22. doi: 10.1107/S0907444908013590. Epub 2008 Jul 17. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 18645230
Structure of D-3-hydroxybutyrate dehydrogenase prepared in the presence of the substrate D-3-hydroxybutyrate and NAD+.
Hoque MM, Shimizu S, Juan EC, Sato Y, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Amano H, Sekiguchi T, Tsunoda M, Takénaka A. Hoque MM, et al. Among authors: shimizu s. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Apr 1;65(Pt 4):331-5. doi: 10.1107/S1744309109008537. Epub 2009 Mar 26. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009. PMID: 19342772 Free PMC article.
The structures of Alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase before and after NAD+ and acetate binding suggest a dynamical reaction mechanism as a member of the SDR family.
Hoque MM, Shimizu S, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Tsunoda M, Amano H, Sekiguchi T, Takénaka A. Hoque MM, et al. Among authors: shimizu s. Acta Crystallogr D Biol Crystallogr. 2008 May;64(Pt 5):496-505. doi: 10.1107/S0907444908004009. Epub 2008 Apr 19. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 18453685
4,521 results