Shi M - Search Results

1

Adeno-to-squamous transition drives resistance to KRAS inhibition in LKB1 mutant lung cancer.

Tong X, Patel AS, Kim E, Li H, Chen Y, Li S, Liu S, Dilly J, Kapner KS, Zhang N, Xue Y, Hover L, Mukhopadhyay S, Sherman F, Myndzar K, Sahu P, Gao Y, Li F, Li F, Fang Z, Jin Y, Gao J, Shi M, Sinha S, Chen L, Chen Y, Kheoh T, Yang W, Yanai I, Moreira AL, Velcheti V, Neel BG, Hu L, Christensen JG, Olson P, Gao D, Zhang MQ, Aguirre AJ, Wong KK, Ji H. Tong X, et al. Among authors: shi m. Cancer Cell. 2024 Mar 11;42(3):413-428.e7. doi: 10.1016/j.ccell.2024.01.012. Epub 2024 Feb 22. Cancer Cell. 2024. PMID: 38402609 Free article.

2

3D genome alterations associated with dysregulated HOXA13 expression in high-risk T-lineage acute lymphoblastic leukemia.

Yang L, Chen F, Zhu H, Chen Y, Dong B, Shi M, Wang W, Jiang Q, Zhang L, Huang X, Zhang MQ, Wu H. Yang L, et al. Among authors: shi m. Nat Commun. 2021 Jun 17;12(1):3708. doi: 10.1038/s41467-021-24044-5. Nat Commun. 2021. PMID: 34140506 Free PMC article.

3

Quantifying the phase separation property of chromatin-associated proteins under physiological conditions using an anti-1,6-hexanediol index.

Shi M, You K, Chen T, Hou C, Liang Z, Liu M, Wang J, Wei T, Qin J, Chen Y, Zhang MQ, Li T. Shi M, et al. Genome Biol. 2021 Aug 17;22(1):229. doi: 10.1186/s13059-021-02456-2. Genome Biol. 2021. PMID: 34404448 Free PMC article.

4

SEAM is a spatial single nuclear metabolomics method for dissecting tissue microenvironment.

Yuan Z, Zhou Q, Cai L, Pan L, Sun W, Qumu S, Yu S, Feng J, Zhao H, Zheng Y, Shi M, Li S, Chen Y, Zhang X, Zhang MQ. Yuan Z, et al. Among authors: shi m. Nat Methods. 2021 Oct;18(10):1223-1232. doi: 10.1038/s41592-021-01276-3. Epub 2021 Oct 4. Nat Methods. 2021. PMID: 34608315

5

Integration of single cell data by disentangled representation learning.

Guo T, Chen Y, Shi M, Li X, Zhang MQ. Guo T, et al. Among authors: shi m. Nucleic Acids Res. 2022 Jan 25;50(2):e8. doi: 10.1093/nar/gkab978. Nucleic Acids Res. 2022. PMID: 34850092 Free PMC article.

6

MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection.

Wang Z, Zhong Y, Ye Z, Zeng L, Chen Y, Shi M, Yuan Z, Zhou Q, Qian M, Zhang MQ. Wang Z, et al. Among authors: shi m. Nucleic Acids Res. 2022 Jan 11;50(1):46-56. doi: 10.1093/nar/gkab1132. Nucleic Acids Res. 2022. PMID: 34850940 Free PMC article.

7

MyoD is a 3D genome structure organizer for muscle cell identity.

Wang R, Chen F, Chen Q, Wan X, Shi M, Chen AK, Ma Z, Li G, Wang M, Ying Y, Liu Q, Li H, Zhang X, Ma J, Zhong J, Chen M, Zhang MQ, Zhang Y, Chen Y, Zhu D. Wang R, et al. Among authors: shi m. Nat Commun. 2022 Jan 11;13(1):205. doi: 10.1038/s41467-021-27865-6. Nat Commun. 2022. PMID: 35017543 Free PMC article.

8

SOTIP is a versatile method for microenvironment modeling with spatial omics data.

Yuan Z, Li Y, Shi M, Yang F, Gao J, Yao J, Zhang MQ. Yuan Z, et al. Among authors: shi m. Nat Commun. 2022 Nov 28;13(1):7330. doi: 10.1038/s41467-022-34867-5. Nat Commun. 2022. PMID: 36443314 Free PMC article.

9

Development and Experimental Validation of a Novel Prognostic Signature for Gastric Cancer.

Liu C, Huo Y, Zhang Y, Yin F, Chen T, Wang Z, Gao J, Jin P, Li X, Shi M, Zhang MQ. Liu C, et al. Among authors: shi m. Cancers (Basel). 2023 Mar 5;15(5):1610. doi: 10.3390/cancers15051610. Cancers (Basel). 2023. PMID: 36900401 Free PMC article.

10

Dual-role transcription factors stabilize intermediate expression levels.

He J, Huo X, Pei G, Jia Z, Yan Y, Yu J, Qu H, Xie Y, Yuan J, Zheng Y, Hu Y, Shi M, You K, Li T, Ma T, Zhang MQ, Ding S, Li P, Li Y. He J, et al. Among authors: shi m. Cell. 2024 Apr 10:S0092-8674(24)00314-3. doi: 10.1016/j.cell.2024.03.023. Online ahead of print. Cell. 2024. PMID: 38631355

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