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A graph-based genome and pan-genome variation of the model plant Setaria.
He Q, Tang S, Zhi H, Chen J, Zhang J, Liang H, Alam O, Li H, Zhang H, Xing L, Li X, Zhang W, Wang H, Shi J, Du H, Wu H, Wang L, Yang P, Xing L, Yan H, Song Z, Liu J, Wang H, Tian X, Qiao Z, Feng G, Guo R, Zhu W, Ren Y, Hao H, Li M, Zhang A, Guo E, Yan F, Li Q, Liu Y, Tian B, Zhao X, Jia R, Feng B, Zhang J, Wei J, Lai J, Jia G, Purugganan M, Diao X. He Q, et al. Among authors: shi j. Nat Genet. 2023 Jul;55(7):1232-1242. doi: 10.1038/s41588-023-01423-w. Epub 2023 Jun 8. Nat Genet. 2023. PMID: 37291196 Free PMC article.
Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes.
Sun S, Zhou Y, Chen J, Shi J, Zhao H, Zhao H, Song W, Zhang M, Cui Y, Dong X, Liu H, Ma X, Jiao Y, Wang B, Wei X, Stein JC, Glaubitz JC, Lu F, Yu G, Liang C, Fengler K, Li B, Rafalski A, Schnable PS, Ware DH, Buckler ES, Lai J. Sun S, et al. Among authors: shi j. Nat Genet. 2018 Sep;50(9):1289-1295. doi: 10.1038/s41588-018-0182-0. Epub 2018 Jul 30. Nat Genet. 2018. PMID: 30061735
Genome-wide identification and analysis of heterotic loci in three maize hybrids.
Liu H, Wang Q, Chen M, Ding Y, Yang X, Liu J, Li X, Zhou C, Tian Q, Lu Y, Fan D, Shi J, Zhang L, Kang C, Sun M, Li F, Wu Y, Zhang Y, Liu B, Zhao XY, Feng Q, Yang J, Han B, Lai J, Zhang XS, Huang X. Liu H, et al. Among authors: shi j. Plant Biotechnol J. 2020 Jan;18(1):185-194. doi: 10.1111/pbi.13186. Epub 2019 Jun 27. Plant Biotechnol J. 2020. PMID: 31199059 Free PMC article.
Evolution and Domestication Footprints Uncovered from the Genomes of Coix.
Liu H, Shi J, Cai Z, Huang Y, Lv M, Du H, Gao Q, Zuo Y, Dong Z, Huang W, Qin R, Liang C, Lai J, Jin W. Liu H, et al. Among authors: shi j. Mol Plant. 2020 Feb 3;13(2):295-308. doi: 10.1016/j.molp.2019.11.009. Epub 2019 Nov 25. Mol Plant. 2020. PMID: 31778842 Free article.
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