Shi D - Search Results

1

In silico discovery of small molecules that inhibit RfaH recruitment to RNA polymerase.

Svetlov D, Shi D, Twentyman J, Nedialkov Y, Rosen DA, Abagyan R, Artsimovitch I. Svetlov D, et al. Among authors: shi d. Mol Microbiol. 2018 Oct;110(1):128-142. doi: 10.1111/mmi.14093. Epub 2018 Oct 2. Mol Microbiol. 2018. PMID: 30069925 Free PMC article.

2

Flipping states: a few key residues decide the winning conformation of the only universally conserved transcription factor.

Shi D, Svetlov D, Abagyan R, Artsimovitch I. Shi D, et al. Nucleic Acids Res. 2017 Sep 6;45(15):8835-8843. doi: 10.1093/nar/gkx523. Nucleic Acids Res. 2017. PMID: 28605514 Free PMC article.

3

Phenotypic, chemical and functional characterization of cyclic nucleotide phosphodiesterase 4 (PDE4) as a potential anthelmintic drug target.

Long T, Rojo-Arreola L, Shi D, El-Sakkary N, Jarnagin K, Rock F, Meewan M, Rascón AA Jr, Lin L, Cunningham KA, Lemieux GA, Podust L, Abagyan R, Ashrafi K, McKerrow JH, Caffrey CR. Long T, et al. Among authors: shi d. PLoS Negl Trop Dis. 2017 Jul 13;11(7):e0005680. doi: 10.1371/journal.pntd.0005680. eCollection 2017 Jul. PLoS Negl Trop Dis. 2017. PMID: 28704396 Free PMC article.

4

Extended Multitarget Pharmacology of Anticancer Drugs.

Shi D, Khan F, Abagyan R. Shi D, et al. J Chem Inf Model. 2019 Jun 24;59(6):3006-3017. doi: 10.1021/acs.jcim.9b00031. Epub 2019 May 3. J Chem Inf Model. 2019. PMID: 31025863 Free PMC article.

5

Population Scale Retrospective Analysis Reveals Potential Risk of Cholestasis in Pregnant Women Taking Omeprazole, Lansoprazole, and Amoxicillin.

Zhang Y, Shi D, Abagyan R, Dai W, Dong M. Zhang Y, et al. Among authors: shi d. Interdiscip Sci. 2019 Jun;11(2):273-281. doi: 10.1007/s12539-019-00335-w. Epub 2019 May 20. Interdiscip Sci. 2019. PMID: 31106388 Free PMC article.

6

Identification of Four Amoebicidal Nontoxic Compounds by a Molecular Docking Screen of Naegleria fowleri Sterol Δ8-Δ7-Isomerase and Phenotypic Assays.

Shi D, Chahal KK, Oto P, Nothias LF, Debnath A, McKerrow JH, Podust LM, Abagyan R. Shi D, et al. ACS Infect Dis. 2019 Dec 13;5(12):2029-2038. doi: 10.1021/acsinfecdis.9b00227. Epub 2019 Oct 17. ACS Infect Dis. 2019. PMID: 31583882 Free PMC article.

7

Unique metabolite preferences of the drug transporters OAT1 and OAT3 analyzed by machine learning.

Nigam AK, Li JG, Lall K, Shi D, Bush KT, Bhatnagar V, Abagyan R, Nigam SK. Nigam AK, et al. Among authors: shi d. J Biol Chem. 2020 Feb 14;295(7):1829-1842. doi: 10.1074/jbc.RA119.010729. Epub 2020 Jan 2. J Biol Chem. 2020. PMID: 31896576 Free PMC article.

8

Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs.

Engelhart DC, Granados JC, Shi D, Saier Jr MH Jr, Baker ME, Abagyan R, Nigam SK. Engelhart DC, et al. Among authors: shi d. Int J Mol Sci. 2020 Mar 5;21(5):1791. doi: 10.3390/ijms21051791. Int J Mol Sci. 2020. PMID: 32150922 Free PMC article.

9

Cytomembrane-mimicking nanocarriers with a scaffold consisting of a CD44-targeted endogenous component for effective asparaginase supramolecule delivery.

Huang Y, Gu J, Yan Z, Hu X, He D, Zhang Y, Li Y, Zhong C, Yang J, Shi D, Abagyan R, Tan Q, Zhang J. Huang Y, et al. Among authors: shi d. Nanoscale. 2020 Jun 11;12(22):12083-12097. doi: 10.1039/d0nr02588g. Nanoscale. 2020. PMID: 32478361

10

Biomimetic Membrane-Structured Nanovesicles Carrying a Supramolecular Enzyme to Cure Lung Cancer.

Gu J, Huang Y, Yan Z, He D, Zhang Y, Xu J, Li Y, Xie X, Xie J, Shi D, Abagyan R, Zhang J, Tan Q. Gu J, et al. Among authors: shi d. ACS Appl Mater Interfaces. 2020 Jul 15;12(28):31112-31123. doi: 10.1021/acsami.0c06207. Epub 2020 Jun 29. ACS Appl Mater Interfaces. 2020. PMID: 32544316

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