Shendure J - Search Results

1

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.

Cusanovich DA, Hill AJ, Aghamirzaie D, Daza RM, Pliner HA, Berletch JB, Filippova GN, Huang X, Christiansen L, DeWitt WS, Lee C, Regalado SG, Read DF, Steemers FJ, Disteche CM, Trapnell C, Shendure J. Cusanovich DA, et al. Among authors: shendure j. Cell. 2018 Aug 23;174(5):1309-1324.e18. doi: 10.1016/j.cell.2018.06.052. Epub 2018 Aug 2. Cell. 2018. PMID: 30078704 Free PMC article.

2

Targeted capture and massively parallel sequencing of 12 human exomes.

Ng SB, Turner EH, Robertson PD, Flygare SD, Bigham AW, Lee C, Shaffer T, Wong M, Bhattacharjee A, Eichler EE, Bamshad M, Nickerson DA, Shendure J. Ng SB, et al. Among authors: shendure j. Nature. 2009 Sep 10;461(7261):272-6. doi: 10.1038/nature08250. Epub 2009 Aug 16. Nature. 2009. PMID: 19684571 Free PMC article.

3

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.

Patwardhan RP, Lee C, Litvin O, Young DL, Pe'er D, Shendure J. Patwardhan RP, et al. Among authors: shendure j. Nat Biotechnol. 2009 Dec;27(12):1173-5. doi: 10.1038/nbt.1589. Nat Biotechnol. 2009. PMID: 19915551 Free PMC article.

4

Parallel, tag-directed assembly of locally derived short sequence reads.

Hiatt JB, Patwardhan RP, Turner EH, Lee C, Shendure J. Hiatt JB, et al. Among authors: shendure j. Nat Methods. 2010 Feb;7(2):119-22. doi: 10.1038/nmeth.1416. Epub 2010 Jan 17. Nat Methods. 2010. PMID: 20081835 Free PMC article.

5

Global survey of escape from X inactivation by RNA-sequencing in mouse.

Yang F, Babak T, Shendure J, Disteche CM. Yang F, et al. Among authors: shendure j. Genome Res. 2010 May;20(5):614-22. doi: 10.1101/gr.103200.109. Epub 2010 Apr 2. Genome Res. 2010. PMID: 20363980 Free PMC article.

6

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.

Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM. Deng X, et al. Among authors: shendure j. Nat Genet. 2011 Oct 23;43(12):1179-85. doi: 10.1038/ng.948. Nat Genet. 2011. PMID: 22019781 Free PMC article.

7

Massively parallel functional dissection of mammalian enhancers in vivo.

Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J. Patwardhan RP, et al. Among authors: shendure j. Nat Biotechnol. 2012 Feb 26;30(3):265-70. doi: 10.1038/nbt.2136. Nat Biotechnol. 2012. PMID: 22371081 Free PMC article.

8

Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules.

Schwartz JJ, Lee C, Shendure J. Schwartz JJ, et al. Among authors: shendure j. Nat Methods. 2012 Sep;9(9):913-5. doi: 10.1038/nmeth.2137. Epub 2012 Aug 12. Nat Methods. 2012. PMID: 22886093 Free PMC article.

9

Capturing native long-range contiguity by in situ library construction and optical sequencing.

Schwartz JJ, Lee C, Hiatt JB, Adey A, Shendure J. Schwartz JJ, et al. Among authors: shendure j. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18749-54. doi: 10.1073/pnas.1202680109. Epub 2012 Oct 29. Proc Natl Acad Sci U S A. 2012. PMID: 23112150 Free PMC article.

10

Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation.

Deng X, Berletch JB, Ma W, Nguyen DK, Hiatt JB, Noble WS, Shendure J, Disteche CM. Deng X, et al. Among authors: shendure j. Dev Cell. 2013 Apr 15;25(1):55-68. doi: 10.1016/j.devcel.2013.01.028. Epub 2013 Mar 21. Dev Cell. 2013. PMID: 23523075 Free PMC article.

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