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ESTprep: preprocessing cDNA sequence reads.
Scheetz TE, Trivedi N, Roberts CA, Kucaba T, Berger B, Robinson NL, Birkett CL, Gavin AJ, O'Leary B, Braun TA, Bonaldo MF, Robinson JP, Sheffield VC, Soares MB, Casavant TL. Scheetz TE, et al. Among authors: sheffield vc. Bioinformatics. 2003 Jul 22;19(11):1318-24. doi: 10.1093/bioinformatics/btg159. Bioinformatics. 2003. PMID: 12874042
High-throughput gene discovery in the rat.
Scheetz TE, Laffin JJ, Berger B, Holte S, Baumes SA, Brown R 2nd, Chang S, Coco J, Conklin J, Crouch K, Donohue M, Doonan G, Estes C, Eyestone M, Fishler K, Gardiner J, Guo L, Johnson B, Keppel C, Kreger R, Lebeck M, Marcelino R, Miljkovich V, Perdue M, Qui L, Rehmann J, Reiter RS, Rhoads B, Schaefer K, Smith C, Sunjevaric I, Trout K, Wu N, Birkett CL, Bischof J, Gackle B, Gavin A, Grundstad AJ, Mokrzycki B, Moressi C, O'Leary B, Pedretti K, Roberts C, Robinson NL, Smith M, Tack D, Trivedi N, Kucaba T, Freeman T, Lin JJ, Bonaldo MF, Casavant TL, Sheffield VC, Soares MB. Scheetz TE, et al. Among authors: sheffield vc. Genome Res. 2004 Apr;14(4):733-41. doi: 10.1101/gr.1414204. Genome Res. 2004. PMID: 15060017 Free PMC article.
Pooled library tissue tags for EST-based gene discovery.
Gavin AJ, Scheetz TE, Roberts CA, O'Leary B, Braun TA, Sheffield VC, Soares MB, Robinson JP, Casavant TL. Gavin AJ, et al. Among authors: sheffield vc. Bioinformatics. 2002 Sep;18(9):1162-6. doi: 10.1093/bioinformatics/18.9.1162. Bioinformatics. 2002. PMID: 12217907
1274 full-open reading frames of transcripts expressed in the developing mouse nervous system.
Bonaldo MF, Bair TB, Scheetz TE, Snir E, Akabogu I, Bair JL, Berger B, Crouch K, Davis A, Eyestone ME, Keppel C, Kucaba TA, Lebeck M, Lin JL, de Melo AI, Rehmann J, Reiter RS, Schaefer K, Smith C, Tack D, Trout K, Sheffield VC, Lin JJ, Casavant TL, Soares MB. Bonaldo MF, et al. Among authors: sheffield vc. Genome Res. 2004 Oct;14(10B):2053-63. doi: 10.1101/gr.2601304. Genome Res. 2004. PMID: 15489326 Free PMC article.
Transcript annotation prioritization and screening system (TrAPSS) for mutation screening.
O'Leary BM, Davis SG, Smith MF, Brown B, Kemp MB, Almabrazi H, Grundstad JA, Burns T, Leontiev V, Andorf J, Clark AF, Sheffield VC, Casavant TL, Scheetz TE, Stone EM, Braun TA. O'Leary BM, et al. Among authors: sheffield vc. J Bioinform Comput Biol. 2007 Dec;5(6):1155-72. doi: 10.1142/s0219720007003132. J Bioinform Comput Biol. 2007. PMID: 18172923
Generation of a high-density rat EST map.
Scheetz TE, Raymond MR, Nishimura DY, McClain A, Roberts C, Birkett C, Gardiner J, Zhang J, Butters N, Sun C, Kwitek-Black A, Jacob H, Casavant TL, Soares MB, Sheffield VC. Scheetz TE, et al. Among authors: sheffield vc. Genome Res. 2001 Mar;11(3):497-502. doi: 10.1101/gr.gr-1516r. Genome Res. 2001. PMID: 11230173 Free PMC article.
359 results