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Refgenie: a reference genome resource manager.
Stolarczyk M, Reuter VP, Smith JP, Magee NE, Sheffield NC. Stolarczyk M, et al. Among authors: sheffield nc. Gigascience. 2020 Feb 1;9(2):giz149. doi: 10.1093/gigascience/giz149. Gigascience. 2020. PMID: 31995185 Free PMC article.
Analytical Approaches for ATAC-seq Data Analysis.
Smith JP, Sheffield NC. Smith JP, et al. Among authors: sheffield nc. Curr Protoc Hum Genet. 2020 Jun;106(1):e101. doi: 10.1002/cphg.101. Curr Protoc Hum Genet. 2020. PMID: 32543102 Free PMC article.
COCOA: coordinate covariation analysis of epigenetic heterogeneity.
Lawson JT, Smith JP, Bekiranov S, Garrett-Bakelman FE, Sheffield NC. Lawson JT, et al. Among authors: sheffield nc. Genome Biol. 2020 Sep 7;21(1):240. doi: 10.1186/s13059-020-02139-4. Genome Biol. 2020. PMID: 32894181 Free PMC article.
GenomicDistributions: fast analysis of genomic intervals with Bioconductor.
Kupkova K, Mosquera JV, Smith JP, Stolarczyk M, Danehy TL, Lawson JT, Xue B, Stubbs JT 4th, LeRoy N, Sheffield NC. Kupkova K, et al. Among authors: sheffield nc. BMC Genomics. 2022 Apr 12;23(1):299. doi: 10.1186/s12864-022-08467-y. BMC Genomics. 2022. PMID: 35413804 Free PMC article.
The chromatin accessibility landscape of primary human cancers.
Corces MR, Granja JM, Shams S, Louie BH, Seoane JA, Zhou W, Silva TC, Groeneveld C, Wong CK, Cho SW, Satpathy AT, Mumbach MR, Hoadley KA, Robertson AG, Sheffield NC, Felau I, Castro MAA, Berman BP, Staudt LM, Zenklusen JC, Laird PW, Curtis C; Cancer Genome Atlas Analysis Network; Greenleaf WJ, Chang HY. Corces MR, et al. Among authors: sheffield nc. Science. 2018 Oct 26;362(6413):eaav1898. doi: 10.1126/science.aav1898. Science. 2018. PMID: 30361341 Free PMC article.
58 results