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GA4GH: International policies and standards for data sharing across genomic research and healthcare.
Rehm HL, Page AJH, Smith L, Adams JB, Alterovitz G, Babb LJ, Barkley MP, Baudis M, Beauvais MJS, Beck T, Beckmann JS, Beltran S, Bernick D, Bernier A, Bonfield JK, Boughtwood TF, Bourque G, Bowers SR, Brookes AJ, Brudno M, Brush MH, Bujold D, Burdett T, Buske OJ, Cabili MN, Cameron DL, Carroll RJ, Casas-Silva E, Chakravarty D, Chaudhari BP, Chen SH, Cherry JM, Chung J, Cline M, Clissold HL, Cook-Deegan RM, Courtot M, Cunningham F, Cupak M, Davies RM, Denisko D, Doerr MJ, Dolman LI, Dove ES, Dursi LJ, Dyke SOM, Eddy JA, Eilbeck K, Ellrott KP, Fairley S, Fakhro KA, Firth HV, Fitzsimons MS, Fiume M, Flicek P, Fore IM, Freeberg MA, Freimuth RR, Fromont LA, Fuerth J, Gaff CL, Gan W, Ghanaim EM, Glazer D, Green RC, Griffith M, Griffith OL, Grossman RL, Groza T, Auvil JMG, Guigó R, Gupta D, Haendel MA, Hamosh A, Hansen DP, Hart RK, Hartley DM, Haussler D, Hendricks-Sturrup RM, Ho CWL, Hobb AE, Hoffman MM, Hofmann OM, Holub P, Hsu JS, Hubaux JP, Hunt SE, Husami A, Jacobsen JO, Jamuar SS, Janes EL, Jeanson F, Jené A, Johns AL, Joly Y, Jones SJM, Kanitz A, Kato K, Keane TM, Kekesi-Lafrance K, Kelleher J, Kerry G, Khor SS, Knoppers BM, Konopko MA, Kosaki K, Kuba M, Lawson J, Leinonen R, Li S… See abstract for full author list ➔ Rehm HL, et al. Among authors: sheffield nc. Cell Genom. 2021 Nov 10;1(2):100029. doi: 10.1016/j.xgen.2021.100029. Cell Genom. 2021. PMID: 35072136 Free PMC article.
Refget: standardized access to reference sequences.
Yates AD, Adams J, Chaturvedi S, Davies RM, Laird M, Leinonen R, Nag R, Sheffield NC, Hofmann O, Keane TM. Yates AD, et al. Among authors: sheffield nc. Bioinformatics. 2021 Dec 22;38(1):299-300. doi: 10.1093/bioinformatics/btab524. Bioinformatics. 2021. PMID: 34260694 Free PMC article.
GenomicDistributions: fast analysis of genomic intervals with Bioconductor.
Kupkova K, Mosquera JV, Smith JP, Stolarczyk M, Danehy TL, Lawson JT, Xue B, Stubbs JT 4th, LeRoy N, Sheffield NC. Kupkova K, et al. Among authors: sheffield nc. BMC Genomics. 2022 Apr 12;23(1):299. doi: 10.1186/s12864-022-08467-y. BMC Genomics. 2022. PMID: 35413804 Free PMC article.
Identity and compatibility of reference genome resources.
Stolarczyk M, Xue B, Sheffield NC. Stolarczyk M, et al. Among authors: sheffield nc. NAR Genom Bioinform. 2021 May 14;3(2):lqab036. doi: 10.1093/nargab/lqab036. eCollection 2021 Jun. NAR Genom Bioinform. 2021. PMID: 34017945 Free PMC article.
Detecting molecular subtypes from multi-omics datasets using SUMO.
Sienkiewicz K, Chen J, Chatrath A, Lawson JT, Sheffield NC, Zhang L, Ratan A. Sienkiewicz K, et al. Among authors: sheffield nc. Cell Rep Methods. 2022 Jan 24;2(1):100152. doi: 10.1016/j.crmeth.2021.100152. Epub 2022 Jan 14. Cell Rep Methods. 2022. PMID: 35211690 Free PMC article.
Analytical Approaches for ATAC-seq Data Analysis.
Smith JP, Sheffield NC. Smith JP, et al. Among authors: sheffield nc. Curr Protoc Hum Genet. 2020 Jun;106(1):e101. doi: 10.1002/cphg.101. Curr Protoc Hum Genet. 2020. PMID: 32543102 Free PMC article.
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Song L, Zhang Z, Grasfeder LL, Boyle AP, Giresi PG, Lee BK, Sheffield NC, Gräf S, Huss M, Keefe D, Liu Z, London D, McDaniell RM, Shibata Y, Showers KA, Simon JM, Vales T, Wang T, Winter D, Zhang Z, Clarke ND, Birney E, Iyer VR, Crawford GE, Lieb JD, Furey TS. Song L, et al. Among authors: sheffield nc. Genome Res. 2011 Oct;21(10):1757-67. doi: 10.1101/gr.121541.111. Epub 2011 Jul 12. Genome Res. 2011. PMID: 21750106 Free PMC article.
58 results