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SING: subgraph search in non-homogeneous graphs.
Di Natale R, Ferro A, Giugno R, Mongiovì M, Pulvirenti A, Shasha D. Di Natale R, et al. Among authors: shasha d. BMC Bioinformatics. 2010 Feb 19;11:96. doi: 10.1186/1471-2105-11-96. BMC Bioinformatics. 2010. PMID: 20170516 Free PMC article.
A subgraph isomorphism algorithm and its application to biochemical data.
Bonnici V, Giugno R, Pulvirenti A, Shasha D, Ferro A. Bonnici V, et al. Among authors: shasha d. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S13. doi: 10.1186/1471-2105-14-S7-S13. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815292 Free PMC article.
Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants.
Varala K, Marshall-Colón A, Cirrone J, Brooks MD, Pasquino AV, Léran S, Mittal S, Rock TM, Edwards MB, Kim GJ, Ruffel S, McCombie WR, Shasha D, Coruzzi GM. Varala K, et al. Among authors: shasha d. Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6494-6499. doi: 10.1073/pnas.1721487115. Epub 2018 May 16. Proc Natl Acad Sci U S A. 2018. PMID: 29769331 Free PMC article.
Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization.
Roszak P, Heo JO, Blob B, Toyokura K, Sugiyama Y, de Luis Balaguer MA, Lau WWY, Hamey F, Cirrone J, Madej E, Bouatta AM, Wang X, Guichard M, Ursache R, Tavares H, Verstaen K, Wendrich J, Melnyk CW, Oda Y, Shasha D, Ahnert SE, Saeys Y, De Rybel B, Heidstra R, Scheres B, Grossmann G, Mähönen AP, Denninger P, Göttgens B, Sozzani R, Birnbaum KD, Helariutta Y. Roszak P, et al. Among authors: shasha d. Science. 2021 Dec 24;374(6575):eaba5531. doi: 10.1126/science.aba5531. Epub 2021 Dec 24. Science. 2021. PMID: 34941412 Free PMC article.
122 results