Shapiro BA - Search Results

1

Halman J, Satterwhite E, Smollett J, Bindewald E, Parlea L, Viard M, Zakrevsky P, Kasprzak WK, Afonin KA, Shapiro BA. Halman J, et al. Among authors: shapiro ba. RNA Dis. 2017;4:e1349. Epub 2017 Jun 21. RNA Dis. 2017. PMID: 34307841 Free PMC article.

2

STRUCTURELAB: a heterogeneous bioinformatics system for RNA structure analysis.

Shapiro BA, Kasprzak W. Shapiro BA, et al. J Mol Graph. 1996 Aug;14(4):194-205, 222-4. doi: 10.1016/s0263-7855(96)00063-x. J Mol Graph. 1996. PMID: 9076633

3

Stem Trace: an interactive visual tool for comparative RNA structure analysis.

Kasprzak W, Shapiro B. Kasprzak W, et al. Bioinformatics. 1999 Jan;15(1):16-31. doi: 10.1093/bioinformatics/15.1.16. Bioinformatics. 1999. PMID: 10068689

4

RNA folding pathway functional intermediates: their prediction and analysis.

Shapiro BA, Bengali D, Kasprzak W, Wu JC. Shapiro BA, et al. J Mol Biol. 2001 Sep 7;312(1):27-44. doi: 10.1006/jmbi.2001.4931. J Mol Biol. 2001. PMID: 11545583

5

Structural differentiation of the HIV-1 polyA signals.

Gee AH, Kasprzak W, Shapiro BA. Gee AH, et al. Among authors: shapiro ba. J Biomol Struct Dyn. 2006 Feb;23(4):417-28. doi: 10.1080/07391102.2006.10531236. J Biomol Struct Dyn. 2006. PMID: 16363877

6

Structural polymorphism of the HIV-1 leader region explored by computational methods.

Kasprzak W, Bindewald E, Shapiro BA. Kasprzak W, et al. Among authors: shapiro ba. Nucleic Acids Res. 2005 Dec 20;33(22):7151-63. doi: 10.1093/nar/gki1015. Print 2005. Nucleic Acids Res. 2005. PMID: 16371347 Free PMC article.

7

RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.

Bindewald E, Shapiro BA. Bindewald E, et al. Among authors: shapiro ba. RNA. 2006 Mar;12(3):342-52. doi: 10.1261/rna.2164906. RNA. 2006. PMID: 16495232 Free PMC article.

8

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm.

Shapiro BA, Kasprzak W, Grunewald C, Aman J. Shapiro BA, et al. J Mol Graph Model. 2006 Dec;25(4):514-31. doi: 10.1016/j.jmgm.2006.04.004. Epub 2006 Apr 28. J Mol Graph Model. 2006. PMID: 16725358

9

The role of cytokine mRNA stability in the pathogenesis of autoimmune disease.

Seko Y, Cole S, Kasprzak W, Shapiro BA, Ragheb JA. Seko Y, et al. Among authors: shapiro ba. Autoimmun Rev. 2006 May;5(5):299-305. doi: 10.1016/j.autrev.2005.10.013. Epub 2005 Dec 21. Autoimmun Rev. 2006. PMID: 16782553 Review.

10

The role of a metastable RNA secondary structure in hepatitis delta virus genotype III RNA editing.

Linnstaedt SD, Kasprzak WK, Shapiro BA, Casey JL. Linnstaedt SD, et al. Among authors: shapiro ba. RNA. 2006 Aug;12(8):1521-33. doi: 10.1261/rna.89306. Epub 2006 Jun 21. RNA. 2006. PMID: 16790843 Free PMC article.

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