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Fossil and genomic evidence constrains the timing of bison arrival in North America.
Froese D, Stiller M, Heintzman PD, Reyes AV, Zazula GD, Soares AE, Meyer M, Hall E, Jensen BJ, Arnold LJ, MacPhee RD, Shapiro B. Froese D, et al. Among authors: shapiro b. Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):3457-3462. doi: 10.1073/pnas.1620754114. Epub 2017 Mar 13. Proc Natl Acad Sci U S A. 2017. PMID: 28289222 Free PMC article.
Rise and fall of the Beringian steppe bison.
Shapiro B, Drummond AJ, Rambaut A, Wilson MC, Matheus PE, Sher AV, Pybus OG, Gilbert MT, Barnes I, Binladen J, Willerslev E, Hansen AJ, Baryshnikov GF, Burns JA, Davydov S, Driver JC, Froese DG, Harington CR, Keddie G, Kosintsev P, Kunz ML, Martin LD, Stephenson RO, Storer J, Tedford R, Zimov S, Cooper A. Shapiro B, et al. Science. 2004 Nov 26;306(5701):1561-5. doi: 10.1126/science.1101074. Science. 2004. PMID: 15567864
Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA.
Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B, Tikhonov A, Huson DH, Tomsho LP, Auch A, Rampp M, Miller W, Schuster SC. Poinar HN, et al. Among authors: shapiro b. Science. 2006 Jan 20;311(5759):392-4. doi: 10.1126/science.1123360. Epub 2005 Dec 20. Science. 2006. PMID: 16368896
Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics.
Campos PF, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood AD, Kahlke RD, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shepherd K, Suchard MA, Zazula GD, Shapiro B, Gilbert MT. Campos PF, et al. Among authors: shapiro b. Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5675-80. doi: 10.1073/pnas.0907189107. Epub 2010 Mar 8. Proc Natl Acad Sci U S A. 2010. PMID: 20212118 Free PMC article.
True single-molecule DNA sequencing of a pleistocene horse bone.
Orlando L, Ginolhac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K, Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I, Shapiro B, Hofreiter M, Al-Rasheid KA, Gilbert MT, Willerslev E. Orlando L, et al. Among authors: shapiro b. Genome Res. 2011 Oct;21(10):1705-19. doi: 10.1101/gr.122747.111. Epub 2011 Jul 29. Genome Res. 2011. PMID: 21803858 Free PMC article.
Species-specific responses of Late Quaternary megafauna to climate and humans.
Lorenzen ED, Nogués-Bravo D, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MT, Nielsen R, Ho SY, Goebel T, Graf KE, Byers D, Stenderup JT, Rasmussen M, Campos PF, Leonard JA, Koepfli KP, Froese D, Zazula G, Stafford TW Jr, Aaris-Sørensen K, Batra P, Haywood AM, Singarayer JS, Valdes PJ, Boeskorov G, Burns JA, Davydov SP, Haile J, Jenkins DL, Kosintsev P, Kuznetsova T, Lai X, Martin LD, McDonald HG, Mol D, Meldgaard M, Munch K, Stephan E, Sablin M, Sommer RS, Sipko T, Scott E, Suchard MA, Tikhonov A, Willerslev R, Wayne RK, Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbek C, Willerslev E. Lorenzen ED, et al. Among authors: shapiro b. Nature. 2011 Nov 2;479(7373):359-64. doi: 10.1038/nature10574. Nature. 2011. PMID: 22048313 Free PMC article.
Improving the performance of true single molecule sequencing for ancient DNA.
Ginolhac A, Vilstrup J, Stenderup J, Rasmussen M, Stiller M, Shapiro B, Zazula G, Froese D, Steinmann KE, Thompson JF, Al-Rasheid KA, Gilbert TM, Willerslev E, Orlando L. Ginolhac A, et al. Among authors: shapiro b. BMC Genomics. 2012 May 10;13:177. doi: 10.1186/1471-2164-13-177. BMC Genomics. 2012. PMID: 22574620 Free PMC article.
Mitochondrial phylogenomics of modern and ancient equids.
Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SC, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC, Cooper A, Shapiro B, Orlando L. Vilstrup JT, et al. Among authors: shapiro b. PLoS One. 2013;8(2):e55950. doi: 10.1371/journal.pone.0055950. Epub 2013 Feb 20. PLoS One. 2013. PMID: 23437078 Free PMC article.
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E. Orlando L, et al. Among authors: shapiro b. Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26. Nature. 2013. PMID: 23803765
1,916 results