Shannon P - Search Results

1

Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Shannon P, et al. Genome Res. 2003 Nov;13(11):2498-504. doi: 10.1101/gr.1239303. Genome Res. 2003. PMID: 14597658 Free PMC article.

2

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach.

Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Baliga NS, et al. Among authors: shannon p. Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):14913-8. doi: 10.1073/pnas.192558999. Epub 2002 Oct 28. Proc Natl Acad Sci U S A. 2002. PMID: 12403819 Free PMC article.

3

Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1.

Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L. Bonneau R, et al. Among authors: shannon p. Genome Biol. 2004;5(8):R52. doi: 10.1186/gb-2004-5-8-r52. Epub 2004 Jul 12. Genome Biol. 2004. PMID: 15287974 Free PMC article.

4

Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea.

Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV. Baliga NS, et al. Among authors: shannon p. Genome Res. 2004 Nov;14(11):2221-34. doi: 10.1101/gr.2700304. Genome Res. 2004. PMID: 15520287 Free PMC article.

5

Derivation of genetic interaction networks from quantitative phenotype data.

Drees BL, Thorsson V, Carter GW, Rives AW, Raymond MZ, Avila-Campillo I, Shannon P, Galitski T. Drees BL, et al. Among authors: shannon p. Genome Biol. 2005;6(4):R38. doi: 10.1186/gb-2005-6-4-r38. Epub 2005 Mar 31. Genome Biol. 2005. PMID: 15833125 Free PMC article.

6

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS. Shannon PT, et al. BMC Bioinformatics. 2006 Mar 28;7:176. doi: 10.1186/1471-2105-7-176. BMC Bioinformatics. 2006. PMID: 16569235 Free PMC article.

7

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.

Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V. Bonneau R, et al. Among authors: shannon p. Genome Biol. 2006;7(5):R36. doi: 10.1186/gb-2006-7-5-r36. Epub 2006 May 10. Genome Biol. 2006. PMID: 16686963 Free PMC article.

8

General transcription factor specified global gene regulation in archaea.

Facciotti MT, Reiss DJ, Pan M, Kaur A, Vuthoori M, Bonneau R, Shannon P, Srivastava A, Donohoe SM, Hood LE, Baliga NS. Facciotti MT, et al. Among authors: shannon p. Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4630-5. doi: 10.1073/pnas.0611663104. Epub 2007 Mar 7. Proc Natl Acad Sci U S A. 2007. PMID: 17360575 Free PMC article.

9

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.

Bare JC, Shannon PT, Schmid AK, Baliga NS. Bare JC, et al. BMC Bioinformatics. 2007 Nov 19;8:456. doi: 10.1186/1471-2105-8-456. BMC Bioinformatics. 2007. PMID: 18021453 Free PMC article.

10

A predictive model for transcriptional control of physiology in a free living cell.

Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, Mori T, Chang DE, Diruggiero J, Johnson CH, Hood L, Baliga NS. Bonneau R, et al. Among authors: shannon p. Cell. 2007 Dec 28;131(7):1354-65. doi: 10.1016/j.cell.2007.10.053. Cell. 2007. PMID: 18160043 Free article.

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