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Accurate genomic variant detection in single cells with primary template-directed amplification.
Gonzalez-Pena V, Natarajan S, Xia Y, Klein D, Carter R, Pang Y, Shaner B, Annu K, Putnam D, Chen W, Connelly J, Pruett-Miller S, Chen X, Easton J, Gawad C. Gonzalez-Pena V, et al. Among authors: shaner b. Proc Natl Acad Sci U S A. 2021 Jun 15;118(24):e2024176118. doi: 10.1073/pnas.2024176118. Proc Natl Acad Sci U S A. 2021. PMID: 34099548 Free PMC article.
Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas.
Newman S, Fan L, Pribnow A, Silkov A, Rice SV, Lee S, Shao Y, Shaner B, Mulder H, Nakitandwe J, Shurtleff S, Azzato EM, Wu G, Zhou X, Barnhill R, Easton J, Nichols KE, Ellison DW, Downing JR, Pappo A, Potter PM, Zhang J, Bahrami A. Newman S, et al. Among authors: shaner b. Nat Med. 2019 Apr;25(4):597-602. doi: 10.1038/s41591-019-0373-y. Epub 2019 Mar 4. Nat Med. 2019. PMID: 30833747 Free PMC article.
SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data.
Davis EM, Sun Y, Liu Y, Kolekar P, Shao Y, Szlachta K, Mulder HL, Ren D, Rice SV, Wang Z, Nakitandwe J, Gout AM, Shaner B, Hall S, Robison LL, Pounds S, Klco JM, Easton J, Ma X. Davis EM, et al. Among authors: shaner b. Genome Biol. 2021 Jan 25;22(1):37. doi: 10.1186/s13059-020-02254-2. Genome Biol. 2021. PMID: 33487172 Free PMC article.
Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL).
Shaw TI, Dong L, Tian L, Qian C, Liu Y, Ju B, High A, Kavdia K, Pagala VR, Shaner B, Pei D, Easton J, Janke LJ, Porter SN, Ma X, Cheng C, Pruett-Miller SM, Choi J, Yu J, Peng J, Gu W, Look AT, Downing JR, Zhang J. Shaw TI, et al. Among authors: shaner b. Sci Rep. 2021 Mar 4;11(1):5154. doi: 10.1038/s41598-021-84647-2. Sci Rep. 2021. PMID: 33664368 Free PMC article.
The miR-424(322)/503 gene cluster regulates pro- versus anti-inflammatory skin DC subset differentiation by modulating TGF-β signaling.
Zyulina V, Yan KK, Ju B, Schwarzenberger E, Passegger C, Tam-Amersdorfer C, Pan Q, Sconocchia T, Pollack C, Shaner B, Zebisch A, Easton J, Yu J, Silva JM, Strobl H. Zyulina V, et al. Among authors: shaner b. Cell Rep. 2021 Apr 27;35(4):109049. doi: 10.1016/j.celrep.2021.109049. Cell Rep. 2021. PMID: 33910004 Free article.
Convergent evolution and multi-wave clonal invasion in H3 K27-altered diffuse midline gliomas treated with a PDGFR inhibitor.
Arunachalam S, Szlachta K, Brady SW, Ma X, Ju B, Shaner B, Mulder HL, Easton J, Raphael BJ, Myers M, Tinkle C, Allen SJ, Orr BA, Wetmore CJ, Baker SJ, Zhang J. Arunachalam S, et al. Among authors: shaner b. Acta Neuropathol Commun. 2022 May 31;10(1):80. doi: 10.1186/s40478-022-01381-0. Acta Neuropathol Commun. 2022. PMID: 35642016 Free PMC article.
Integrome signatures of lentiviral gene therapy for SCID-X1 patients.
Yan KK, Condori J, Ma Z, Metais JY, Ju B, Ding L, Dhungana Y, Palmer LE, Langfitt DM, Ferrara F, Throm R, Shi H, Risch I, Bhatara S, Shaner B, Lockey TD, Talleur AC, Easton J, Meagher MM, Puck JM, Cowan MJ, Zhou S, Mamcarz E, Gottschalk S, Yu J. Yan KK, et al. Among authors: shaner b. Sci Adv. 2023 Oct 6;9(40):eadg9959. doi: 10.1126/sciadv.adg9959. Epub 2023 Oct 6. Sci Adv. 2023. PMID: 37801507 Free PMC article.
18 results