Shamsir MS - Search Results

1

Bioinformatics in Malaysia: hope, initiative, effort, reality, and challenges.

Zeti AM, Shamsir MS, Tajul-Arifin K, Merican AF, Mohamed R, Nathan S, Mahadi NM, Napis S, Tan TW. Zeti AM, et al. Among authors: shamsir ms. PLoS Comput Biol. 2009 Aug;5(8):e1000457. doi: 10.1371/journal.pcbi.1000457. Epub 2009 Aug 28. PLoS Comput Biol. 2009. PMID: 19714208 Free PMC article. Review. No abstract available.

2

Structural prediction of a novel chitinase from the psychrophilic Glaciozyma antarctica PI12 and an analysis of its structural properties and function.

Ramli AN, Mahadi NM, Shamsir MS, Rabu A, Joyce-Tan KH, Murad AM, Illias RM. Ramli AN, et al. Among authors: shamsir ms. J Comput Aided Mol Des. 2012 Aug;26(8):947-61. doi: 10.1007/s10822-012-9585-7. Epub 2012 Jun 19. J Comput Aided Mol Des. 2012. PMID: 22710891

3

Sequence and structural investigation of a novel psychrophilic α-amylase from Glaciozyma antarctica PI12 for cold-adaptation analysis.

Ramli AN, Azhar MA, Shamsir MS, Rabu A, Murad AM, Mahadi NM, Illias RM. Ramli AN, et al. Among authors: shamsir ms. J Mol Model. 2013 Aug;19(8):3369-83. doi: 10.1007/s00894-013-1861-5. Epub 2013 May 18. J Mol Model. 2013. PMID: 23686283

4

An expanded mammal mitogenome dataset from Southeast Asia.

Mohd Salleh F, Ramos-Madrigal J, Peñaloza F, Liu S, Mikkel-Holger SS, Riddhi PP, Martins R, Lenz D, Fickel J, Roos C, Shamsir MS, Azman MS, Burton KL, Stephen JR, Wilting A, Gilbert MTP. Mohd Salleh F, et al. Among authors: shamsir ms. Gigascience. 2017 Aug 1;6(8):1-8. doi: 10.1093/gigascience/gix053. Gigascience. 2017. PMID: 28873965 Free PMC article.

5

Deciphering the catalytic amino acid residues of l-2-haloacid dehalogenase (DehL) from Rhizobium sp. RC1: An in silico analysis.

Adamu A, Wahab RA, Shamsir MS, Aliyu F, Huyop F. Adamu A, et al. Among authors: shamsir ms. Comput Biol Chem. 2017 Oct;70:125-132. doi: 10.1016/j.compbiolchem.2017.08.007. Epub 2017 Aug 14. Comput Biol Chem. 2017. PMID: 28873365

6

birgHPC: creating instant computing clusters for bioinformatics and molecular dynamics.

Chew TH, Joyce-Tan KH, Akma F, Shamsir MS. Chew TH, et al. Among authors: shamsir ms. Bioinformatics. 2011 May 1;27(9):1320-1. doi: 10.1093/bioinformatics/btr109. Epub 2011 Mar 12. Bioinformatics. 2011. PMID: 21398666

7

Structural and functional analysis of a novel psychrophilic β-mannanase from Glaciozyma antarctica PI12.

Parvizpour S, Razmara J, Ramli AN, Md Illias R, Shamsir MS. Parvizpour S, et al. Among authors: shamsir ms. J Comput Aided Mol Des. 2014 Jun;28(6):685-98. doi: 10.1007/s10822-014-9751-1. Epub 2014 May 22. J Comput Aided Mol Des. 2014. PMID: 24849507

8

Structure prediction, molecular dynamics simulation and docking studies of D-specific dehalogenase from Rhizobium sp. RC1.

Sudi IY, Wong EL, Joyce-Tan KH, Shamsir MS, Jamaluddin H, Huyop F. Sudi IY, et al. Among authors: shamsir ms. Int J Mol Sci. 2012 Nov 26;13(12):15724-54. doi: 10.3390/ijms131215724. Int J Mol Sci. 2012. PMID: 23443090 Free PMC article.

9

The role of alternative salt bridges in cold adaptation of a novel psychrophilic laminarinase.

Parvizpour S, Razmara J, Shamsir MS, Illias RM, Abdul Murad AM. Parvizpour S, et al. Among authors: shamsir ms. J Biomol Struct Dyn. 2017 Jun;35(8):1685-1692. doi: 10.1080/07391102.2016.1191043. Epub 2016 Aug 5. J Biomol Struct Dyn. 2017. PMID: 27206405 No abstract available.

10

Model-guided metabolic gene knockout of gnd for enhanced succinate production in Escherichia coli from glucose and glycerol substrates.

Mienda BS, Shamsir MS, Illias RM. Mienda BS, et al. Among authors: shamsir ms. Comput Biol Chem. 2016 Apr;61:130-7. doi: 10.1016/j.compbiolchem.2016.01.013. Epub 2016 Feb 4. Comput Biol Chem. 2016. PMID: 26878126

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