Shah A - Search Results

1

Bioinformatic insights from metagenomics through visualization.

Havre SL, Webb-Robertson BJ, Shah A, Posse C, Gopalan B, Brockman FJ. Havre SL, et al. Among authors: shah a. Proc IEEE Comput Syst Bioinform Conf. 2005:341-50. doi: 10.1109/csb.2005.19. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447991

2

SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

Shah AR, Oehmen CS, Webb-Robertson BJ. Shah AR, et al. Bioinformatics. 2008 Mar 15;24(6):783-90. doi: 10.1093/bioinformatics/btn028. Epub 2008 Feb 1. Bioinformatics. 2008. PMID: 18245127

3

Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager.

Shah AR, Singhal M, Klicker KR, Stephan EG, Wiley HS, Waters KM. Shah AR, et al. Bioinformatics. 2007 Apr 1;23(7):906-9. doi: 10.1093/bioinformatics/btm031. Epub 2007 Feb 25. Bioinformatics. 2007. PMID: 17324940

4

SEBINI: Software Environment for BIological Network Inference.

Taylor RC, Shah A, Treatman C, Blevins M. Taylor RC, et al. Among authors: shah a. Bioinformatics. 2006 Nov 1;22(21):2706-8. doi: 10.1093/bioinformatics/btl444. Epub 2006 Sep 5. Bioinformatics. 2006. PMID: 16954144

5

A feature vector integration approach for a generalized support vector machine pairwise homology algorithm.

Webb-Robertson BJ, Oehmen CS, Shah AR. Webb-Robertson BJ, et al. Comput Biol Chem. 2008 Dec;32(6):458-61. doi: 10.1016/j.compbiolchem.2008.07.017. Epub 2008 Jul 16. Comput Biol Chem. 2008. PMID: 18722814

6

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.

LaMarche BL, Crowell KL, Jaitly N, Petyuk VA, Shah AR, Polpitiya AD, Sandoval JD, Kiebel GR, Monroe ME, Callister SJ, Metz TO, Anderson GA, Smith RD. LaMarche BL, et al. Among authors: shah ar. BMC Bioinformatics. 2013 Feb 12;14:49. doi: 10.1186/1471-2105-14-49. BMC Bioinformatics. 2013. PMID: 23398735 Free PMC article.

7

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Webb-Robertson BJ, Cannon WR, Oehmen CS, Shah AR, Gurumoorthi V, Lipton MS, Waters KM. Webb-Robertson BJ, et al. Bioinformatics. 2008 Jul 1;24(13):1503-9. doi: 10.1093/bioinformatics/btn218. Epub 2008 May 3. Bioinformatics. 2008. PMID: 18453551 Corrected and republished.

8

Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.

Shah AR, Oehmen CS, Harper J, Webb-Robertson BJ. Shah AR, et al. Comput Biol Chem. 2007 Apr;31(2):138-42. doi: 10.1016/j.compbiolchem.2007.02.012. Epub 2007 Feb 23. Comput Biol Chem. 2007. PMID: 17416337

9

An efficient data format for mass spectrometry-based proteomics.

Shah AR, Davidson J, Monroe ME, Mayampurath AM, Danielson WF, Shi Y, Robinson AC, Clowers BH, Belov ME, Anderson GA, Smith RD. Shah AR, et al. J Am Soc Mass Spectrom. 2010 Oct;21(10):1784-8. doi: 10.1016/j.jasms.2010.06.014. Epub 2010 Jul 7. J Am Soc Mass Spectrom. 2010. PMID: 20674389 Free article.

10

Machine learning based prediction for peptide drift times in ion mobility spectrometry.

Shah AR, Agarwal K, Baker ES, Singhal M, Mayampurath AM, Ibrahim YM, Kangas LJ, Monroe ME, Zhao R, Belov ME, Anderson GA, Smith RD. Shah AR, et al. Bioinformatics. 2010 Jul 1;26(13):1601-7. doi: 10.1093/bioinformatics/btq245. Epub 2010 May 21. Bioinformatics. 2010. PMID: 20495001 Free PMC article.

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